Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACLV7A_RS03185 | Genome accession | NZ_OZ217344 |
| Coordinates | 624986..625456 (+) | Length | 156 a.a. |
| NCBI ID | WP_000609606.1 | Uniprot ID | A0A0U0CT68 |
| Organism | Streptococcus mitis isolate S. mitis E22 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 625768..627024 | 624986..625456 | flank | 312 |
Gene organization within MGE regions
Location: 624986..627024
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLV7A_RS03185 (SMIE22_06220) | ssbA | 624986..625456 (+) | 471 | WP_000609606.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
| ACLV7A_RS03190 (SMIE22_06230) | rpsR | 625488..625727 (+) | 240 | WP_000068664.1 | 30S ribosomal protein S18 | - |
| ACLV7A_RS03195 (SMIE22_06240) | - | 625768..627024 (-) | 1257 | WP_050213065.1 | ISL3 family transposase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17352.20 Da Isoelectric Point: 4.9164
>NTDB_id=1170282 ACLV7A_RS03185 WP_000609606.1 624986..625456(+) (ssbA) [Streptococcus mitis isolate S. mitis E22]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRDENPFGATNPLDISDDDLPF
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRDENPFGATNPLDISDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1170282 ACLV7A_RS03185 WP_000609606.1 624986..625456(+) (ssbA) [Streptococcus mitis isolate S. mitis E22]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAACCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGCCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAAGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAAGGTCATACAGGTGGAGCTTACTCTGCCCCAACTGCAAACTATTCAGCACCTACAAATTCAGTGCCAGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACAAATCCATTGGATATTTCAGATGATGATTTACCATTCTAA
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAACCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGCCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAAGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAAGGTCATACAGGTGGAGCTTACTCTGCCCCAACTGCAAACTATTCAGCACCTACAAATTCAGTGCCAGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACAAATCCATTGGATATTTCAGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.233 |
100 |
0.609 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.409 |
100 |
0.603 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
51.282 |
75 |
0.385 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.66 |
67.949 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
50.427 |
75 |
0.378 |
| ssbB/cilA | Streptococcus mitis SK321 |
50.427 |
75 |
0.378 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
50.427 |
75 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
50.427 |
75 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
50.427 |
75 |
0.378 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
54.128 |
69.872 |
0.378 |