Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFEL6_RS18335 Genome accession   NZ_OZ183475
Coordinates   2557669..2558706 (-) Length   345 a.a.
NCBI ID   WP_375321440.1    Uniprot ID   -
Organism   Aliivibrio logei isolate 622f83115ee5131b54a8b4d1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2552669..2563706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFEL6_RS18300 - 2553055..2553318 (-) 264 WP_375321434.1 DUF1488 domain-containing protein -
  ACFEL6_RS18305 aroE 2553319..2554140 (-) 822 WP_375321435.1 shikimate dehydrogenase -
  ACFEL6_RS18310 - 2554205..2554762 (-) 558 WP_375321436.1 Sua5/YciO/YrdC/YwlC family protein -
  ACFEL6_RS18315 purE 2554966..2555451 (+) 486 WP_375321437.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ACFEL6_RS18320 - 2555454..2556566 (+) 1113 WP_375321438.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ACFEL6_RS18325 - 2556621..2557181 (-) 561 WP_375321439.1 type I DNA topoisomerase -
  ACFEL6_RS18330 - 2557193..2557666 (-) 474 WP_105056604.1 DUF494 family protein -
  ACFEL6_RS18335 dprA 2557669..2558706 (-) 1038 WP_375321440.1 DNA-processing protein DprA Machinery gene
  ACFEL6_RS18340 - 2558785..2559855 (-) 1071 WP_375321441.1 LysM peptidoglycan-binding domain-containing protein -
  ACFEL6_RS18345 def 2559973..2560482 (+) 510 WP_122033472.1 peptide deformylase -
  ACFEL6_RS18350 fmt 2560548..2561495 (+) 948 WP_375321442.1 methionyl-tRNA formyltransferase -
  ACFEL6_RS18355 rsmB 2561600..2562880 (+) 1281 WP_375321443.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37390.89 Da        Isoelectric Point: 5.8793

>NTDB_id=1168058 ACFEL6_RS18335 WP_375321440.1 2557669..2558706(-) (dprA) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
MTRLRAVDSPENILKYSTEQLLALGLSSAQITYLQCSEHKEVNKCLEWQEKNDTHIILPLSSPIYPKLLSEISAPPPILF
IKGDPLTLSEPQVAIVGSRNASLEGLDCAEQFARSIVQHNYVVTSGLALGVDGYAHHGAIEAKGKTIAVLGSGLDKIYPA
KHRLLADRVIDNGALVSEFRPDAPPRADNFPRRNRIISGLSTGVLVIEAAERSGSLITARYANEQGREVFALPGSIQNPT
AKGSNGLIKAGAKLVSSPEDIFDEIGALTECAISHQPSLFEQEVITEQLPFPKVFATVGNEATPVDIIAERCQMPVHEIM
MQLLELELQGFIAAVPGGYIKKRRG

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1168058 ACFEL6_RS18335 WP_375321440.1 2557669..2558706(-) (dprA) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
ATGACTCGCTTACGGGCGGTTGATTCACCAGAAAATATATTGAAATACAGTACAGAACAATTGCTTGCTTTGGGGTTGTC
GTCAGCACAAATAACATACCTTCAATGCTCAGAGCATAAAGAGGTTAATAAGTGTTTAGAGTGGCAGGAGAAAAATGATA
CTCATATTATCTTGCCATTAAGTAGTCCTATATACCCAAAGTTGCTTTCAGAGATCAGTGCGCCTCCTCCAATTTTATTT
ATTAAAGGAGACCCTCTTACGCTATCAGAACCGCAAGTAGCAATCGTTGGTAGTCGTAATGCCAGTTTAGAAGGATTAGA
TTGTGCTGAGCAATTTGCGCGTTCCATTGTTCAACATAATTATGTTGTTACTAGTGGCTTGGCTCTGGGGGTTGATGGTT
ATGCTCATCATGGAGCGATTGAAGCTAAGGGAAAAACGATAGCCGTGCTGGGTTCTGGATTAGATAAAATATATCCGGCA
AAACATCGCCTATTGGCTGACCGAGTGATTGATAACGGTGCACTTGTTTCTGAGTTTCGTCCGGATGCACCACCAAGGGC
TGATAATTTCCCAAGACGCAATCGTATTATTAGTGGGTTATCAACTGGTGTTCTTGTAATTGAAGCTGCGGAACGTTCAG
GATCGTTAATTACAGCAAGATATGCGAATGAACAAGGTCGTGAAGTGTTTGCTCTTCCGGGCTCAATACAAAATCCAACA
GCAAAAGGGTCTAATGGATTAATAAAAGCTGGAGCAAAGTTAGTTTCTTCTCCTGAAGATATTTTTGATGAAATAGGAGC
ATTAACTGAGTGTGCAATATCTCATCAACCGTCATTATTCGAGCAAGAAGTTATCACAGAACAATTGCCATTTCCTAAAG
TGTTCGCTACCGTAGGCAATGAGGCGACGCCTGTTGATATTATCGCAGAGCGGTGTCAGATGCCTGTACATGAAATCATG
ATGCAATTACTTGAATTAGAGTTGCAAGGTTTCATCGCTGCAGTCCCAGGTGGTTACATTAAAAAGCGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(50-256)

DprA winged helix domain (DprA_WH)

(293-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

59.42

100

0.594
  dprA Vibrio cholerae strain A1552

54.155

100

0.548
  dprA Glaesserella parasuis strain SC1401

46.875

100

0.478
  dprA Legionella pneumophila strain ERS1305867

48.986

85.797

0.42
  dprA Haemophilus influenzae Rd KW20

43.59

90.435

0.394
  dprA Neisseria meningitidis strain C311

36.388

100

0.391
  dprA Neisseria meningitidis MC58

36.388

100

0.391
  dprA Acinetobacter baumannii D1279779

37.101

100

0.371
  dprA Acinetobacter baumannii strain A118

37.685

97.681

0.368
  dprA Neisseria gonorrhoeae MS11

39.062

92.754

0.362

Multiple sequence alignment