Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | AB8516_RS10040 | Genome accession | NZ_OZ156465 |
| Coordinates | 2290752..2291981 (+) | Length | 409 a.a. |
| NCBI ID | WP_369160325.1 | Uniprot ID | - |
| Organism | Candidatus Thiodiazotropha sp. LNASS1 isolate 6c41e2f9-faec-415b-97c3-6ddcd12de2e9 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2285752..2296981
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB8516_RS10025 | tnpA | 2287082..2287464 (-) | 383 | Protein_1977 | IS200/IS605 family transposase | - |
| AB8516_RS10030 | - | 2287969..2288430 (-) | 462 | WP_369160321.1 | pilin | - |
| AB8516_RS10035 | pilB | 2289033..2290748 (+) | 1716 | WP_369160323.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AB8516_RS10040 | pilC | 2290752..2291981 (+) | 1230 | WP_369160325.1 | type II secretion system F family protein | Machinery gene |
| AB8516_RS10045 | pilD | 2292027..2292899 (+) | 873 | WP_369160327.1 | A24 family peptidase | Machinery gene |
| AB8516_RS10050 | coaE | 2292899..2293495 (+) | 597 | WP_369160329.1 | dephospho-CoA kinase | - |
| AB8516_RS10055 | clpB | 2293676..2296270 (-) | 2595 | WP_369160331.1 | ATP-dependent chaperone ClpB | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 44970.99 Da Isoelectric Point: 10.1318
>NTDB_id=1167913 AB8516_RS10040 WP_369160325.1 2290752..2291981(+) (pilC) [Candidatus Thiodiazotropha sp. LNASS1 isolate 6c41e2f9-faec-415b-97c3-6ddcd12de2e9]
MAPPRKKAQVKSHLYSWEGMDKKGSRLTGESRATDINMVKADLRRQGVTPLKVRKKATSILSTKKKITSADVTVFSRQLA
TMMSAGVPMVQAFDIVGRGHENPSMQELILTIKADVEGGTALADALKKHPLHFEDLFVNLVRAGEHAGVLETLLHKIATY
KEKTESIKGKIKKAMFYPAAIIVAAIVVTAILLIFVIPQFESLFTNFGADLPAFTQLVVNLSHFARDWWWAIILGFIAVV
YVFTYIWKRSRSFRHSVDRILLKIPVVGMILNKSAIARFSRTLATMSAAGVPLVEALDSVAGATGNVVYSDAVLRMREDV
ATGQSLQLAMRQRNLFPNMVVQMVSIGEESGALDDMLNKVADFYEEQVDNAVDAMSSLMEPIIMVVLGTLVGGLVVAMYL
PIFKMGAVI
MAPPRKKAQVKSHLYSWEGMDKKGSRLTGESRATDINMVKADLRRQGVTPLKVRKKATSILSTKKKITSADVTVFSRQLA
TMMSAGVPMVQAFDIVGRGHENPSMQELILTIKADVEGGTALADALKKHPLHFEDLFVNLVRAGEHAGVLETLLHKIATY
KEKTESIKGKIKKAMFYPAAIIVAAIVVTAILLIFVIPQFESLFTNFGADLPAFTQLVVNLSHFARDWWWAIILGFIAVV
YVFTYIWKRSRSFRHSVDRILLKIPVVGMILNKSAIARFSRTLATMSAAGVPLVEALDSVAGATGNVVYSDAVLRMREDV
ATGQSLQLAMRQRNLFPNMVVQMVSIGEESGALDDMLNKVADFYEEQVDNAVDAMSSLMEPIIMVVLGTLVGGLVVAMYL
PIFKMGAVI
Nucleotide
Download Length: 1230 bp
>NTDB_id=1167913 AB8516_RS10040 WP_369160325.1 2290752..2291981(+) (pilC) [Candidatus Thiodiazotropha sp. LNASS1 isolate 6c41e2f9-faec-415b-97c3-6ddcd12de2e9]
ATGGCGCCTCCAAGAAAGAAAGCTCAGGTAAAATCCCACCTCTATTCCTGGGAGGGAATGGACAAGAAGGGATCTCGTCT
CACGGGTGAAAGCCGTGCAACCGATATCAACATGGTTAAGGCGGATCTGCGCCGACAGGGAGTAACACCCCTCAAGGTCA
GAAAAAAGGCCACATCGATATTAAGCACCAAAAAGAAGATTACCAGTGCCGATGTCACTGTCTTCAGCCGACAACTTGCC
ACCATGATGTCTGCCGGTGTACCCATGGTACAGGCCTTCGATATCGTAGGTCGGGGACATGAGAATCCATCTATGCAGGA
GCTGATCCTCACCATTAAGGCAGATGTTGAAGGTGGTACCGCCCTGGCCGATGCCTTGAAAAAACATCCATTGCATTTCG
AGGACCTGTTTGTCAATCTGGTTCGTGCAGGTGAACATGCGGGTGTGCTCGAAACGCTACTCCACAAAATTGCCACCTAT
AAGGAAAAAACGGAATCTATCAAAGGCAAAATTAAAAAAGCGATGTTTTATCCTGCTGCAATCATTGTTGCAGCTATTGT
AGTGACAGCAATTTTACTGATATTCGTCATCCCACAGTTTGAATCGCTTTTCACAAATTTTGGCGCTGATCTACCGGCAT
TCACTCAACTCGTGGTAAATCTATCTCATTTTGCACGAGACTGGTGGTGGGCCATAATTCTTGGGTTTATAGCGGTTGTT
TATGTATTTACATATATATGGAAACGTTCTCGCAGTTTTCGACATTCTGTCGATCGTATACTGCTTAAAATCCCTGTGGT
CGGCATGATTCTCAATAAATCGGCAATTGCCCGCTTTTCCCGCACACTCGCCACCATGTCGGCCGCTGGAGTACCACTGG
TTGAAGCACTCGACTCCGTCGCCGGTGCGACGGGCAATGTCGTTTACAGTGATGCTGTCTTACGGATGCGGGAAGACGTG
GCCACTGGTCAGTCTCTGCAGCTTGCCATGAGACAACGTAACCTTTTCCCCAATATGGTGGTGCAGATGGTCTCCATCGG
CGAAGAGTCCGGCGCGCTGGATGATATGCTGAACAAAGTAGCCGACTTTTATGAGGAACAGGTCGATAATGCAGTCGATG
CTATGAGCAGTCTGATGGAGCCCATTATCATGGTAGTACTGGGCACCCTTGTTGGAGGACTGGTTGTCGCCATGTATCTG
CCTATCTTTAAGATGGGAGCGGTAATCTAA
ATGGCGCCTCCAAGAAAGAAAGCTCAGGTAAAATCCCACCTCTATTCCTGGGAGGGAATGGACAAGAAGGGATCTCGTCT
CACGGGTGAAAGCCGTGCAACCGATATCAACATGGTTAAGGCGGATCTGCGCCGACAGGGAGTAACACCCCTCAAGGTCA
GAAAAAAGGCCACATCGATATTAAGCACCAAAAAGAAGATTACCAGTGCCGATGTCACTGTCTTCAGCCGACAACTTGCC
ACCATGATGTCTGCCGGTGTACCCATGGTACAGGCCTTCGATATCGTAGGTCGGGGACATGAGAATCCATCTATGCAGGA
GCTGATCCTCACCATTAAGGCAGATGTTGAAGGTGGTACCGCCCTGGCCGATGCCTTGAAAAAACATCCATTGCATTTCG
AGGACCTGTTTGTCAATCTGGTTCGTGCAGGTGAACATGCGGGTGTGCTCGAAACGCTACTCCACAAAATTGCCACCTAT
AAGGAAAAAACGGAATCTATCAAAGGCAAAATTAAAAAAGCGATGTTTTATCCTGCTGCAATCATTGTTGCAGCTATTGT
AGTGACAGCAATTTTACTGATATTCGTCATCCCACAGTTTGAATCGCTTTTCACAAATTTTGGCGCTGATCTACCGGCAT
TCACTCAACTCGTGGTAAATCTATCTCATTTTGCACGAGACTGGTGGTGGGCCATAATTCTTGGGTTTATAGCGGTTGTT
TATGTATTTACATATATATGGAAACGTTCTCGCAGTTTTCGACATTCTGTCGATCGTATACTGCTTAAAATCCCTGTGGT
CGGCATGATTCTCAATAAATCGGCAATTGCCCGCTTTTCCCGCACACTCGCCACCATGTCGGCCGCTGGAGTACCACTGG
TTGAAGCACTCGACTCCGTCGCCGGTGCGACGGGCAATGTCGTTTACAGTGATGCTGTCTTACGGATGCGGGAAGACGTG
GCCACTGGTCAGTCTCTGCAGCTTGCCATGAGACAACGTAACCTTTTCCCCAATATGGTGGTGCAGATGGTCTCCATCGG
CGAAGAGTCCGGCGCGCTGGATGATATGCTGAACAAAGTAGCCGACTTTTATGAGGAACAGGTCGATAATGCAGTCGATG
CTATGAGCAGTCTGATGGAGCCCATTATCATGGTAGTACTGGGCACCCTTGTTGGAGGACTGGTTGTCGCCATGTATCTG
CCTATCTTTAAGATGGGAGCGGTAATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
58.081 |
96.822 |
0.562 |
| pilC | Acinetobacter baumannii D1279779 |
56.65 |
99.267 |
0.562 |
| pilC | Acinetobacter baylyi ADP1 |
55.419 |
99.267 |
0.55 |
| pilC | Pseudomonas stutzeri DSM 10701 |
55 |
97.8 |
0.538 |
| pilG | Neisseria meningitidis 44/76-A |
46.75 |
97.8 |
0.457 |
| pilG | Neisseria gonorrhoeae MS11 |
46.75 |
97.8 |
0.457 |
| pilC | Vibrio cholerae strain A1552 |
42.424 |
96.822 |
0.411 |
| pilC | Vibrio campbellii strain DS40M4 |
41.667 |
96.822 |
0.403 |
| pilC | Thermus thermophilus HB27 |
37.845 |
97.555 |
0.369 |