Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | AB8516_RS10035 | Genome accession | NZ_OZ156465 |
| Coordinates | 2289033..2290748 (+) | Length | 571 a.a. |
| NCBI ID | WP_369160323.1 | Uniprot ID | - |
| Organism | Candidatus Thiodiazotropha sp. LNASS1 isolate 6c41e2f9-faec-415b-97c3-6ddcd12de2e9 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2284033..2295748
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB8516_RS10020 | - | 2284653..2286491 (-) | 1839 | WP_369160319.1 | hypothetical protein | - |
| AB8516_RS10025 | tnpA | 2287082..2287464 (-) | 383 | Protein_1977 | IS200/IS605 family transposase | - |
| AB8516_RS10030 | - | 2287969..2288430 (-) | 462 | WP_369160321.1 | pilin | - |
| AB8516_RS10035 | pilB | 2289033..2290748 (+) | 1716 | WP_369160323.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AB8516_RS10040 | pilC | 2290752..2291981 (+) | 1230 | WP_369160325.1 | type II secretion system F family protein | Machinery gene |
| AB8516_RS10045 | pilD | 2292027..2292899 (+) | 873 | WP_369160327.1 | A24 family peptidase | Machinery gene |
| AB8516_RS10050 | coaE | 2292899..2293495 (+) | 597 | WP_369160329.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 571 a.a. Molecular weight: 63063.99 Da Isoelectric Point: 4.8735
>NTDB_id=1167912 AB8516_RS10035 WP_369160323.1 2289033..2290748(+) (pilB) [Candidatus Thiodiazotropha sp. LNASS1 isolate 6c41e2f9-faec-415b-97c3-6ddcd12de2e9]
MAKAKQQINLSGLGRCLIQDGLISEEKAESAFAEALKNKVPYVSYLVENKILNSIDIAISASRGFGVPIFDLDVLDPGVI
PTDEVAEKLVRSHHALPIFRRGNRLFLAVSDPTNHQGLDEIRFNTGLASEAILVEENKLKRTIDKVMEAQESGMDDLLDA
DLDNLDVSGGDDEQENDESKLDVDEAPVVRYVNKILLDAIKQGVSDVHFEPYEYTYRIRYRQDGLLHEVASPPSNLANRL
SSRIKVMSRMNIAERRVPQDGRIKMQLSKSRAIDFRVNTCPTLYGEKIVLRILDPTSAQLGIEALGFEEEQREKFLSAIN
KPYGMVLVTGPTGSGKTVSLYTALNLLNKPEVNISTAEDPVEIQVPGINQVNTNVKTGLTFAEALRAFLRQDPDIVMVGE
IRDLETAEIAVKAAQTGHLVLSTLHTNDAPQTLTRMANMGVPPFNIASSVLLIMAQRLARRLCEHCKASDDLPKEALLEE
GFTEQDIDTGFTIYKPVGCDLCTSGYKGRVGIFQVMPVSETMGKIIMEGGSSLQLEEQADKEGVNNLRRSGLRKVMQGIT
SLQELNRVTKD
MAKAKQQINLSGLGRCLIQDGLISEEKAESAFAEALKNKVPYVSYLVENKILNSIDIAISASRGFGVPIFDLDVLDPGVI
PTDEVAEKLVRSHHALPIFRRGNRLFLAVSDPTNHQGLDEIRFNTGLASEAILVEENKLKRTIDKVMEAQESGMDDLLDA
DLDNLDVSGGDDEQENDESKLDVDEAPVVRYVNKILLDAIKQGVSDVHFEPYEYTYRIRYRQDGLLHEVASPPSNLANRL
SSRIKVMSRMNIAERRVPQDGRIKMQLSKSRAIDFRVNTCPTLYGEKIVLRILDPTSAQLGIEALGFEEEQREKFLSAIN
KPYGMVLVTGPTGSGKTVSLYTALNLLNKPEVNISTAEDPVEIQVPGINQVNTNVKTGLTFAEALRAFLRQDPDIVMVGE
IRDLETAEIAVKAAQTGHLVLSTLHTNDAPQTLTRMANMGVPPFNIASSVLLIMAQRLARRLCEHCKASDDLPKEALLEE
GFTEQDIDTGFTIYKPVGCDLCTSGYKGRVGIFQVMPVSETMGKIIMEGGSSLQLEEQADKEGVNNLRRSGLRKVMQGIT
SLQELNRVTKD
Nucleotide
Download Length: 1716 bp
>NTDB_id=1167912 AB8516_RS10035 WP_369160323.1 2289033..2290748(+) (pilB) [Candidatus Thiodiazotropha sp. LNASS1 isolate 6c41e2f9-faec-415b-97c3-6ddcd12de2e9]
ATGGCCAAAGCAAAACAACAAATTAACCTAAGCGGGCTTGGACGTTGCCTGATCCAGGATGGCTTAATCAGTGAAGAAAA
GGCAGAGTCCGCCTTCGCGGAAGCACTGAAAAATAAAGTACCCTATGTCAGCTATCTTGTTGAAAATAAAATATTAAATA
GTATTGATATCGCCATATCCGCCTCACGAGGATTTGGTGTACCCATCTTCGATCTTGATGTACTTGATCCTGGCGTCATA
CCTACTGACGAGGTTGCCGAGAAACTCGTCCGCAGCCACCATGCTTTACCCATTTTTCGTCGTGGAAACCGTCTATTTCT
TGCCGTATCTGACCCTACCAACCACCAGGGACTGGATGAAATCCGATTCAATACAGGCCTCGCTTCAGAAGCGATCCTAG
TCGAGGAGAACAAGCTCAAACGGACTATCGACAAGGTTATGGAGGCCCAGGAATCCGGCATGGATGATTTGCTGGATGCC
GACCTGGACAACCTGGATGTCTCCGGTGGCGATGATGAACAGGAAAATGATGAATCAAAGCTGGATGTCGACGAGGCACC
AGTCGTCCGATATGTAAATAAAATACTACTGGATGCCATAAAACAGGGTGTTTCCGATGTCCATTTCGAACCCTACGAAT
ACACCTACCGTATCCGCTATCGTCAGGATGGACTGTTACACGAGGTCGCCAGCCCCCCCTCCAATCTAGCCAACCGTCTA
TCCAGCCGCATCAAGGTTATGTCGCGCATGAATATTGCCGAGAGGCGTGTCCCTCAGGATGGGCGCATTAAGATGCAACT
TTCCAAGTCCCGCGCTATCGATTTCCGTGTCAATACATGCCCAACCCTGTATGGCGAAAAGATTGTACTGCGTATCCTTG
ACCCCACCAGTGCACAACTCGGCATCGAGGCGCTCGGGTTCGAGGAGGAACAGCGCGAAAAGTTTCTTAGCGCCATCAAC
AAACCCTATGGAATGGTCCTGGTCACCGGCCCCACCGGTAGCGGTAAAACGGTCAGTCTCTACACCGCACTAAATCTGCT
CAATAAGCCGGAAGTCAACATCTCCACCGCCGAAGACCCTGTAGAGATTCAGGTACCGGGCATCAACCAGGTTAATACCA
ATGTCAAAACAGGCCTGACTTTTGCGGAAGCCTTAAGAGCCTTTCTACGCCAGGATCCCGATATCGTAATGGTGGGTGAG
ATTCGTGATCTCGAGACGGCTGAAATTGCGGTCAAGGCAGCTCAGACAGGCCACTTGGTACTTTCAACTTTACACACCAA
TGACGCCCCCCAGACACTTACGCGTATGGCCAACATGGGTGTCCCACCTTTCAATATAGCTTCCTCTGTGCTCCTCATTA
TGGCCCAGCGTCTCGCCAGGCGCCTTTGTGAGCACTGCAAAGCATCTGACGACCTACCTAAAGAGGCACTCTTGGAGGAG
GGGTTCACCGAACAGGATATTGACACCGGCTTCACCATCTACAAACCGGTAGGATGTGACCTGTGTACCAGCGGTTACAA
GGGTCGTGTTGGTATATTTCAAGTTATGCCCGTCTCTGAAACGATGGGAAAGATTATTATGGAAGGCGGCTCATCGTTGC
AATTGGAAGAGCAAGCGGATAAAGAGGGTGTCAATAACCTGCGCCGATCCGGTCTGCGTAAAGTGATGCAGGGGATTACC
AGCCTCCAAGAACTCAACCGGGTAACCAAGGACTAA
ATGGCCAAAGCAAAACAACAAATTAACCTAAGCGGGCTTGGACGTTGCCTGATCCAGGATGGCTTAATCAGTGAAGAAAA
GGCAGAGTCCGCCTTCGCGGAAGCACTGAAAAATAAAGTACCCTATGTCAGCTATCTTGTTGAAAATAAAATATTAAATA
GTATTGATATCGCCATATCCGCCTCACGAGGATTTGGTGTACCCATCTTCGATCTTGATGTACTTGATCCTGGCGTCATA
CCTACTGACGAGGTTGCCGAGAAACTCGTCCGCAGCCACCATGCTTTACCCATTTTTCGTCGTGGAAACCGTCTATTTCT
TGCCGTATCTGACCCTACCAACCACCAGGGACTGGATGAAATCCGATTCAATACAGGCCTCGCTTCAGAAGCGATCCTAG
TCGAGGAGAACAAGCTCAAACGGACTATCGACAAGGTTATGGAGGCCCAGGAATCCGGCATGGATGATTTGCTGGATGCC
GACCTGGACAACCTGGATGTCTCCGGTGGCGATGATGAACAGGAAAATGATGAATCAAAGCTGGATGTCGACGAGGCACC
AGTCGTCCGATATGTAAATAAAATACTACTGGATGCCATAAAACAGGGTGTTTCCGATGTCCATTTCGAACCCTACGAAT
ACACCTACCGTATCCGCTATCGTCAGGATGGACTGTTACACGAGGTCGCCAGCCCCCCCTCCAATCTAGCCAACCGTCTA
TCCAGCCGCATCAAGGTTATGTCGCGCATGAATATTGCCGAGAGGCGTGTCCCTCAGGATGGGCGCATTAAGATGCAACT
TTCCAAGTCCCGCGCTATCGATTTCCGTGTCAATACATGCCCAACCCTGTATGGCGAAAAGATTGTACTGCGTATCCTTG
ACCCCACCAGTGCACAACTCGGCATCGAGGCGCTCGGGTTCGAGGAGGAACAGCGCGAAAAGTTTCTTAGCGCCATCAAC
AAACCCTATGGAATGGTCCTGGTCACCGGCCCCACCGGTAGCGGTAAAACGGTCAGTCTCTACACCGCACTAAATCTGCT
CAATAAGCCGGAAGTCAACATCTCCACCGCCGAAGACCCTGTAGAGATTCAGGTACCGGGCATCAACCAGGTTAATACCA
ATGTCAAAACAGGCCTGACTTTTGCGGAAGCCTTAAGAGCCTTTCTACGCCAGGATCCCGATATCGTAATGGTGGGTGAG
ATTCGTGATCTCGAGACGGCTGAAATTGCGGTCAAGGCAGCTCAGACAGGCCACTTGGTACTTTCAACTTTACACACCAA
TGACGCCCCCCAGACACTTACGCGTATGGCCAACATGGGTGTCCCACCTTTCAATATAGCTTCCTCTGTGCTCCTCATTA
TGGCCCAGCGTCTCGCCAGGCGCCTTTGTGAGCACTGCAAAGCATCTGACGACCTACCTAAAGAGGCACTCTTGGAGGAG
GGGTTCACCGAACAGGATATTGACACCGGCTTCACCATCTACAAACCGGTAGGATGTGACCTGTGTACCAGCGGTTACAA
GGGTCGTGTTGGTATATTTCAAGTTATGCCCGTCTCTGAAACGATGGGAAAGATTATTATGGAAGGCGGCTCATCGTTGC
AATTGGAAGAGCAAGCGGATAAAGAGGGTGTCAATAACCTGCGCCGATCCGGTCTGCGTAAAGTGATGCAGGGGATTACC
AGCCTCCAAGAACTCAACCGGGTAACCAAGGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Legionella pneumophila strain ERS1305867 |
57.391 |
100 |
0.578 |
| pilB | Acinetobacter baumannii D1279779 |
58.156 |
98.774 |
0.574 |
| pilB | Acinetobacter baylyi ADP1 |
56.128 |
98.599 |
0.553 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
49.291 |
98.774 |
0.487 |
| pilB | Vibrio cholerae strain A1552 |
49.378 |
98.599 |
0.487 |
| pilB | Vibrio campbellii strain DS40M4 |
49.027 |
98.949 |
0.485 |
| pilF | Neisseria gonorrhoeae MS11 |
49.201 |
98.599 |
0.485 |
| pilF | Thermus thermophilus HB27 |
39.292 |
98.949 |
0.389 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.115 |
98.949 |
0.387 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
38.909 |
96.322 |
0.375 |