Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AB5Y62_RS11675 | Genome accession | NZ_OZ078860 |
| Coordinates | 2550832..2551131 (-) | Length | 99 a.a. |
| NCBI ID | WP_004736087.1 | Uniprot ID | A0A1R3FA07 |
| Organism | Vibrio splendidus isolate A06 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2545832..2556131
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB5Y62_RS11650 | - | 2546273..2547505 (+) | 1233 | WP_368084665.1 | pyridoxal phosphate-dependent aminotransferase | - |
| AB5Y62_RS11655 | yfbR | 2547675..2548259 (+) | 585 | WP_017080360.1 | 5'-deoxynucleotidase | - |
| AB5Y62_RS11660 | - | 2548314..2549657 (+) | 1344 | WP_368084666.1 | anti-phage deoxyguanosine triphosphatase | - |
| AB5Y62_RS11665 | - | 2549684..2550283 (-) | 600 | WP_260256798.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| AB5Y62_RS11670 | rrtA | 2550293..2550841 (+) | 549 | WP_368084667.1 | rhombosortase | - |
| AB5Y62_RS11675 | comEA | 2550832..2551131 (-) | 300 | WP_004736087.1 | ComEA family DNA-binding protein | Machinery gene |
| AB5Y62_RS11680 | ppiD | 2551393..2553258 (-) | 1866 | WP_004736085.1 | peptidylprolyl isomerase | - |
| AB5Y62_RS11685 | - | 2553479..2553772 (-) | 294 | WP_012604504.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10741.13 Da Isoelectric Point: 4.2092
>NTDB_id=1166594 AB5Y62_RS11675 WP_004736087.1 2550832..2551131(-) (comEA) [Vibrio splendidus isolate A06]
MRTIYSTLLLSFLMALSSPAFSDSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTTADDLV
SVKGIGEATVEKNRERIQL
MRTIYSTLLLSFLMALSSPAFSDSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTTADDLV
SVKGIGEATVEKNRERIQL
Nucleotide
Download Length: 300 bp
>NTDB_id=1166594 AB5Y62_RS11675 WP_004736087.1 2550832..2551131(-) (comEA) [Vibrio splendidus isolate A06]
ATGCGCACGATATATTCAACACTACTTCTTTCATTTCTGATGGCCCTGAGCTCCCCAGCGTTTTCTGATAGCCCAACTAA
AGCTGAGCTTTACGATGGCATCGAGATTACGGTAAACATCAATACTGCGACGGCAGAAGAACTCTCAGCGCTATTAGTTG
GTGTTGGGGACAAGAAAGCCCAAGAGATCGTCGATTACAGAGATCAAAACGGTGCGTTTACGACTGCTGATGATTTGGTG
AGTGTGAAAGGGATAGGTGAAGCTACGGTTGAAAAGAACCGCGAAAGAATTCAACTTTGA
ATGCGCACGATATATTCAACACTACTTCTTTCATTTCTGATGGCCCTGAGCTCCCCAGCGTTTTCTGATAGCCCAACTAA
AGCTGAGCTTTACGATGGCATCGAGATTACGGTAAACATCAATACTGCGACGGCAGAAGAACTCTCAGCGCTATTAGTTG
GTGTTGGGGACAAGAAAGCCCAAGAGATCGTCGATTACAGAGATCAAAACGGTGCGTTTACGACTGCTGATGATTTGGTG
AGTGTGAAAGGGATAGGTGAAGCTACGGTTGAAAAGAACCGCGAAAGAATTCAACTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
54.639 |
97.98 |
0.535 |
| comEA | Vibrio cholerae strain A1552 |
54.639 |
97.98 |
0.535 |
| comEA | Vibrio campbellii strain DS40M4 |
55.435 |
92.929 |
0.515 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
56.044 |
91.919 |
0.515 |
| comEA | Acinetobacter baylyi ADP1 |
51.22 |
82.828 |
0.424 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
36.937 |
100 |
0.414 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
60 |
60.606 |
0.364 |
| comEA | Legionella pneumophila str. Paris |
35.294 |
100 |
0.364 |
| comEA | Legionella pneumophila strain ERS1305867 |
35.294 |
100 |
0.364 |