Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB5Y62_RS02690 Genome accession   NZ_OZ078860
Coordinates   541271..542500 (-) Length   409 a.a.
NCBI ID   WP_256799836.1    Uniprot ID   A0AA43G3L5
Organism   Vibrio splendidus isolate A06     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 536271..547500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS02650 rpsP 536316..536564 (+) 249 WP_004735508.1 30S ribosomal protein S16 -
  AB5Y62_RS02655 rimM 536589..537143 (+) 555 WP_004735510.1 ribosome maturation factor RimM -
  AB5Y62_RS02660 trmD 537170..537910 (+) 741 WP_004735512.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AB5Y62_RS02665 rplS 537970..538323 (+) 354 WP_004735514.1 50S ribosomal protein L19 -
  AB5Y62_RS02670 yacG 538671..538868 (-) 198 WP_004735515.1 DNA gyrase inhibitor YacG -
  AB5Y62_RS02675 zapD 538950..539690 (-) 741 WP_368084106.1 cell division protein ZapD -
  AB5Y62_RS02680 coaE 539717..540331 (-) 615 WP_368084107.1 dephospho-CoA kinase -
  AB5Y62_RS02685 pilD 540334..541203 (-) 870 WP_017087402.1 A24 family peptidase Machinery gene
  AB5Y62_RS02690 pilC 541271..542500 (-) 1230 WP_256799836.1 type II secretion system F family protein Machinery gene
  AB5Y62_RS02695 pilB 542515..544200 (-) 1686 WP_368084938.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB5Y62_RS02700 pilA 544205..544630 (-) 426 WP_368084108.1 pilin Machinery gene
  AB5Y62_RS02705 nadC 544886..545776 (-) 891 WP_102448387.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AB5Y62_RS02710 ampD 545860..546459 (+) 600 WP_368084109.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45382.33 Da        Isoelectric Point: 10.2353

>NTDB_id=1166581 AB5Y62_RS02690 WP_256799836.1 541271..542500(-) (pilC) [Vibrio splendidus isolate A06]
MSSKSKQSQLKNYHWKGINSSGKKVSGQSLALTELEVREKLKEQHIQIKKIKKKSISAITRLTHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKSKVIKALIYPAMVVAVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLYLSHWMQAYSFYTAIGIGLLIL
SFQQLRQRSYSIRLSTSRLGLRFPILGAVITKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETA
SGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1166581 AB5Y62_RS02690 WP_256799836.1 541271..542500(-) (pilC) [Vibrio splendidus isolate A06]
ATGAGTAGTAAAAGCAAACAATCACAACTAAAAAACTACCATTGGAAGGGAATCAATAGTTCTGGCAAGAAAGTATCAGG
GCAGAGCTTAGCGCTCACCGAATTAGAAGTGCGAGAGAAGCTCAAAGAGCAGCACATTCAGATTAAGAAAATCAAAAAGA
AAAGCATCTCAGCAATCACTCGTTTAACTCACCGCGTCAAAGCCAAAGATATCACTATTTTGACTCGCCAACTGGCTACC
ATGTTGGCGACTGGTGTGCCGATCGTGCAAGCCATCAAGCTGGTGTCAGACAATCACCGCAAAGCAGAAATGAAATCGAT
TTTATCGCACATCTGCAAAGGTGTAGAAGCCGGAACGCCAATCTCAAAAGCGATGCGAACCGCAAGCCGCCACTTTGATG
ACCTCTATACCGACTTGGTCGCGACAGGCGAACTCTCCGGCAACCTTGCACAAGTATTTGAACGCTTGGCGACCTATCGT
GAAAAGAGTGAGCAACTAAAATCCAAAGTTATAAAGGCGCTCATCTATCCTGCAATGGTTGTTGCGGTCGCTCTTACCGT
TTCCTACTTAATGCTGACCATGGTAATTCCGGAATTTGAATCGATGTTTTCAGGCTTCGGAGCAGACTTACCTTGGTTCA
CCCAGCAAGTGCTTTATCTTTCCCATTGGATGCAGGCTTACAGTTTCTATACTGCCATCGGTATTGGTTTGTTAATTCTG
TCTTTTCAGCAACTGCGTCAGCGATCCTACTCGATTCGACTTTCAACCAGTCGCCTTGGCTTACGCTTTCCTATCTTGGG
TGCTGTCATCACCAAGGCATCGATTGCAAAGTTCAGCCGAACACTTTCAACCAGTTTCAGTTCTGGAATTCCCATCTTAA
CCAGCCTTAAAACCACAGCTAAAACCGCAGGCAACCTGCATTATGAATCGGCCATCATTGAGGTTCACCGTGAGACTGCC
TCAGGCATGCCGATGTACATTGCAATGCGCAATACCAATGCCTTCCCGGAGATGGTTTTGCAGATGGTGATGATTGGTGA
AGAGTCAGGCAATCTTGATGATATGCTCAATAAAGTCGCCTCCATTTACGAGTTCGAAGTAGACAACACCGTCGATAACC
TAGGTAAGATTCTAGAGCCACTGATCATCGTATTTTTAGGCACCGTAGTAGGCGGACTTGTTGTCGCGATGTACTTACCG
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80.75

97.8

0.79
  pilC Vibrio campbellii strain DS40M4

74.138

99.267

0.736
  pilC Acinetobacter baylyi ADP1

42.543

100

0.425
  pilC Acinetobacter baumannii D1279779

42.574

98.778

0.421
  pilC Legionella pneumophila strain ERS1305867

41.855

97.555

0.408
  pilG Neisseria gonorrhoeae MS11

41.542

98.289

0.408
  pilG Neisseria meningitidis 44/76-A

41.294

98.289

0.406
  pilC Pseudomonas stutzeri DSM 10701

40.594

98.778

0.401

Multiple sequence alignment