Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AB5Y62_RS02700 | Genome accession | NZ_OZ078860 |
| Coordinates | 544205..544630 (-) | Length | 141 a.a. |
| NCBI ID | WP_368084108.1 | Uniprot ID | - |
| Organism | Vibrio splendidus isolate A06 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 539205..549630
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB5Y62_RS02680 | coaE | 539717..540331 (-) | 615 | WP_368084107.1 | dephospho-CoA kinase | - |
| AB5Y62_RS02685 | pilD | 540334..541203 (-) | 870 | WP_017087402.1 | A24 family peptidase | Machinery gene |
| AB5Y62_RS02690 | pilC | 541271..542500 (-) | 1230 | WP_256799836.1 | type II secretion system F family protein | Machinery gene |
| AB5Y62_RS02695 | pilB | 542515..544200 (-) | 1686 | WP_368084938.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AB5Y62_RS02700 | pilA | 544205..544630 (-) | 426 | WP_368084108.1 | pilin | Machinery gene |
| AB5Y62_RS02705 | nadC | 544886..545776 (-) | 891 | WP_102448387.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AB5Y62_RS02710 | ampD | 545860..546459 (+) | 600 | WP_368084109.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AB5Y62_RS02715 | pdhR | 546940..547701 (+) | 762 | WP_004735446.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14764.77 Da Isoelectric Point: 4.5741
>NTDB_id=1166583 AB5Y62_RS02700 WP_368084108.1 544205..544630(-) (pilA) [Vibrio splendidus isolate A06]
MNNKKRRTNQKGFTLIELMIVVAIIGALSAIAVPAYKDYVAKSQASSALATLKSLVTPAELFIQENGDLTTLDALGVVSG
ANSLGQLEIANQAASSAEISFTFDDGALNTGVIKVTRSDTGWACGRTVNAQLQSIDLEGCD
MNNKKRRTNQKGFTLIELMIVVAIIGALSAIAVPAYKDYVAKSQASSALATLKSLVTPAELFIQENGDLTTLDALGVVSG
ANSLGQLEIANQAASSAEISFTFDDGALNTGVIKVTRSDTGWACGRTVNAQLQSIDLEGCD
Nucleotide
Download Length: 426 bp
>NTDB_id=1166583 AB5Y62_RS02700 WP_368084108.1 544205..544630(-) (pilA) [Vibrio splendidus isolate A06]
ATGAATAACAAAAAGAGAAGAACAAATCAGAAAGGTTTTACGCTGATTGAGTTGATGATTGTGGTTGCGATTATTGGTGC
TTTATCAGCTATAGCCGTTCCGGCATATAAAGACTATGTAGCCAAAAGCCAAGCATCTTCAGCTTTAGCTACACTAAAAT
CTCTAGTTACACCTGCGGAACTCTTTATTCAAGAAAATGGTGACTTAACAACTTTAGATGCTCTTGGAGTAGTGTCTGGA
GCTAACTCACTTGGACAATTGGAAATCGCAAATCAAGCAGCCTCTTCTGCAGAGATATCATTTACCTTCGATGATGGAGC
TTTGAATACTGGAGTTATTAAGGTTACACGTTCTGACACGGGTTGGGCTTGTGGTCGAACCGTGAATGCACAGCTTCAGT
CTATTGACCTAGAAGGTTGTGACTAG
ATGAATAACAAAAAGAGAAGAACAAATCAGAAAGGTTTTACGCTGATTGAGTTGATGATTGTGGTTGCGATTATTGGTGC
TTTATCAGCTATAGCCGTTCCGGCATATAAAGACTATGTAGCCAAAAGCCAAGCATCTTCAGCTTTAGCTACACTAAAAT
CTCTAGTTACACCTGCGGAACTCTTTATTCAAGAAAATGGTGACTTAACAACTTTAGATGCTCTTGGAGTAGTGTCTGGA
GCTAACTCACTTGGACAATTGGAAATCGCAAATCAAGCAGCCTCTTCTGCAGAGATATCATTTACCTTCGATGATGGAGC
TTTGAATACTGGAGTTATTAAGGTTACACGTTCTGACACGGGTTGGGCTTGTGGTCGAACCGTGAATGCACAGCTTCAGT
CTATTGACCTAGAAGGTTGTGACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
49.306 |
100 |
0.504 |
| pilA | Pseudomonas aeruginosa PAK |
43.939 |
93.617 |
0.411 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.356 |
100 |
0.397 |
| pilA | Vibrio cholerae strain A1552 |
38.356 |
100 |
0.397 |
| pilA | Vibrio cholerae C6706 |
38.356 |
100 |
0.397 |