Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3Y94_RS04070 Genome accession   NZ_OZ061549
Coordinates   818885..820135 (-) Length   416 a.a.
NCBI ID   WP_367295136.1    Uniprot ID   -
Organism   Levilactobacillus yonginensis isolate Levilactobacillus yonginensis CIRM-BIA2544     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 813885..825135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y94_RS04055 - 814863..815657 (-) 795 WP_367295133.1 TIGR00282 family metallophosphoesterase -
  AB3Y94_RS04060 rny 815873..817432 (-) 1560 WP_367295134.1 ribonuclease Y -
  AB3Y94_RS04065 recA 817672..818793 (-) 1122 WP_367295135.1 recombinase RecA Machinery gene
  AB3Y94_RS04070 cinA 818885..820135 (-) 1251 WP_367295136.1 competence/damage-inducible protein A Machinery gene
  AB3Y94_RS04075 pgsA 820207..820794 (-) 588 WP_367295137.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3Y94_RS04080 - 820867..821811 (-) 945 WP_367295138.1 helix-turn-helix domain-containing protein -
  AB3Y94_RS04085 - 821927..823216 (-) 1290 WP_367295139.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB3Y94_RS04090 - 823206..824483 (-) 1278 WP_367295140.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45227.59 Da        Isoelectric Point: 5.8615

>NTDB_id=1166218 AB3Y94_RS04070 WP_367295136.1 818885..820135(-) (cinA) [Levilactobacillus yonginensis isolate Levilactobacillus yonginensis CIRM-BIA2544]
MQAEVIAVGTEILLGQIVDTNSAFIARGLADAGIEVYYHSLVGDNADRLTTVVNQARSRSDLVVISGGLGPTKDDLTKQT
VAHLLGVKLVEDTAAMDKIHRHFEITGREMTPNNRLQALYPAGSLPLKNETGMAVGAFYRDPNAADIMLLPGPPSEAEPM
FEHQALPQIIAAYHRHEFLVSKVLRFFGIGESKLVTELSDLIDHQTNPTIAPYAKVNEVTLRITARATERAVGEQLLRDM
TATIMTRVGDYFYGFGDDNSLAQVVVNELIDRKLTITAAESLTAGKFQSTLGDVPGVSAVFPGGFVTYANDAKRDLLEIP
QAVIDAQGVVSEATAKEMAERSRTKLDTDFALSFTGVAGPDSLENQPAGTVWLGLAQRGKAPMAKLVHFTGNRAKIRERS
VLTGFDWLRRVLRDLK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1166218 AB3Y94_RS04070 WP_367295136.1 818885..820135(-) (cinA) [Levilactobacillus yonginensis isolate Levilactobacillus yonginensis CIRM-BIA2544]
ATGCAAGCAGAAGTTATTGCGGTTGGAACGGAAATCTTACTCGGGCAAATCGTGGATACAAACTCAGCATTTATTGCCCG
GGGGCTAGCAGACGCTGGCATTGAAGTCTATTACCATTCTTTAGTGGGCGATAACGCTGACCGGCTGACGACAGTGGTCA
ATCAGGCCCGTTCGCGCAGTGATCTAGTCGTAATCAGTGGTGGTTTAGGTCCAACGAAGGATGACCTGACAAAGCAAACG
GTGGCTCATCTCTTAGGCGTGAAACTAGTTGAAGACACTGCTGCGATGGATAAAATTCACCGGCACTTTGAGATTACAGG
CCGAGAAATGACGCCTAACAACCGGCTGCAGGCCCTTTATCCAGCTGGGAGTCTCCCACTTAAGAATGAGACGGGGATGG
CTGTGGGGGCTTTCTATCGTGATCCCAATGCCGCTGACATTATGCTGCTGCCAGGTCCTCCGAGCGAAGCTGAACCAATG
TTTGAACATCAAGCTCTACCGCAGATTATTGCGGCTTATCATCGTCATGAGTTCCTGGTCTCAAAGGTGCTGCGGTTCTT
TGGAATCGGTGAAAGTAAACTGGTTACGGAACTGAGTGATCTAATTGACCACCAGACAAATCCAACCATCGCACCGTATG
CTAAGGTCAATGAAGTTACATTGCGAATTACCGCACGAGCAACTGAACGGGCGGTTGGCGAGCAGCTCCTGCGTGACATG
ACGGCAACAATTATGACGCGGGTCGGTGATTATTTTTATGGCTTTGGTGACGACAACAGTTTGGCACAAGTTGTCGTCAA
CGAGCTGATTGACCGTAAGCTGACTATTACAGCGGCTGAGAGTCTCACTGCTGGTAAGTTCCAGAGTACGTTGGGGGATG
TGCCAGGTGTCTCAGCCGTTTTCCCTGGTGGCTTCGTAACTTATGCTAATGACGCCAAACGCGACCTCTTGGAGATTCCC
CAAGCGGTCATCGATGCGCAAGGCGTGGTCAGTGAAGCGACTGCTAAGGAAATGGCTGAACGGTCCCGAACAAAATTAGA
TACCGACTTTGCGCTCAGTTTCACCGGAGTTGCGGGTCCCGATTCGTTAGAAAATCAGCCGGCAGGGACGGTTTGGCTGG
GGTTAGCGCAACGAGGTAAGGCCCCAATGGCCAAGCTGGTTCATTTCACTGGAAATCGCGCCAAAATTCGGGAGCGGTCC
GTCTTGACTGGTTTCGATTGGTTACGCCGCGTTTTGCGTGACTTGAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.048

100

0.495
  cinA Streptococcus mitis NCTC 12261

48.81

100

0.493
  cinA Streptococcus mutans UA159

49.157

99.76

0.49
  cinA Streptococcus pneumoniae TIGR4

47.619

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.381

100

0.478
  cinA Streptococcus pneumoniae R6

47.381

100

0.478
  cinA Streptococcus pneumoniae D39

47.143

100

0.476
  cinA Bacillus subtilis subsp. subtilis str. 168

46.359

99.038

0.459
  cinA Streptococcus suis isolate S10

39.759

99.76

0.397

Multiple sequence alignment