Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB3Y95_RS03435 Genome accession   NZ_OZ061245
Coordinates   745184..746431 (+) Length   415 a.a.
NCBI ID   WP_367297023.1    Uniprot ID   -
Organism   Loigolactobacillus coryniformis isolate Loigolactobacillus coryniformis CIRM-BIA2685     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 740184..751431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y95_RS03415 - 740930..742240 (+) 1311 WP_367297020.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AB3Y95_RS03420 - 742237..742965 (+) 729 WP_367297021.1 elongation factor P 5-aminopentanone reductase -
  AB3Y95_RS03425 - 743276..744229 (+) 954 WP_367297022.1 RodZ domain-containing protein -
  AB3Y95_RS03430 pgsA 744489..745076 (+) 588 WP_219481951.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3Y95_RS03435 cinA 745184..746431 (+) 1248 WP_367297023.1 competence/damage-inducible protein A Machinery gene
  AB3Y95_RS03440 recA 746566..747660 (+) 1095 WP_367297024.1 recombinase RecA Machinery gene
  AB3Y95_RS03445 rny 747932..749494 (+) 1563 WP_146989462.1 ribonuclease Y -
  AB3Y95_RS03450 - 749681..750754 (+) 1074 WP_186758233.1 glycosyltransferase family 4 protein -
  AB3Y95_RS03455 - 750755..751408 (-) 654 WP_367297025.1 YigZ family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45074.53 Da        Isoelectric Point: 5.0086

>NTDB_id=1165580 AB3Y95_RS03435 WP_367297023.1 745184..746431(+) (cinA) [Loigolactobacillus coryniformis isolate Loigolactobacillus coryniformis CIRM-BIA2685]
MRAEIIAVGTEILLGEITNTTTPFVARELADLGIDVYYQSVVGDNTARLEAAIQLADSRSDLIILTGGLGPTKDDLTKQT
LAAHLNEKLVVDEAAMAYIEAFFARSQQPMTENNRLQAMLPANSIPLKNPVGMAVGALYQAPAHTYMLLPGPPSELEAMF
TDSARPLLIKQFKQANVLDSRVLRFHGIGESALVTQLADLIDQQTNPTIAPYAKTNEVTLRLTAEATDQATADQLLAELE
AKVQARVGQYFYGYGEHNSLEQVVVTLLKKRGLTITAAESLTAGLFQSMLANVSGASDIFNGGFVTYSLAEKANLLQISP
EYLHKYGVVSEETAIAMARQAKLLLKSDIGVSFTGVAGPDKLEGQPAGTVYIGIAYRDQIPFARKFVFSRTRNFVRQQSA
LTGFDLLYHLLDADK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=1165580 AB3Y95_RS03435 WP_367297023.1 745184..746431(+) (cinA) [Loigolactobacillus coryniformis isolate Loigolactobacillus coryniformis CIRM-BIA2685]
ATGCGAGCAGAGATCATTGCAGTGGGCACGGAGATTCTTTTAGGCGAGATCACGAATACGACAACACCGTTTGTGGCCCG
TGAGTTGGCTGATCTAGGGATCGATGTTTATTATCAATCAGTCGTCGGGGATAATACGGCACGTCTGGAAGCAGCAATCC
AATTGGCTGATAGTCGTAGTGATTTGATCATTTTAACTGGTGGCTTGGGTCCAACTAAAGACGATTTAACGAAGCAAACT
TTAGCGGCACACCTTAATGAAAAATTGGTGGTTGATGAAGCGGCTATGGCTTATATTGAAGCTTTCTTTGCGCGCTCACA
GCAACCAATGACTGAAAATAATCGTTTGCAAGCAATGCTACCGGCTAATAGTATACCTTTAAAAAATCCAGTCGGCATGG
CTGTGGGGGCACTTTATCAGGCACCAGCACATACCTATATGTTATTGCCAGGACCACCAAGTGAATTGGAAGCCATGTTT
ACAGATTCAGCTCGTCCGTTGTTGATCAAGCAGTTTAAGCAGGCTAATGTGCTCGATTCACGGGTGCTTCGCTTTCATGG
TATCGGTGAATCAGCGCTAGTCACACAATTAGCGGATTTGATCGACCAACAAACTAATCCCACGATTGCCCCTTATGCTA
AAACCAATGAAGTTACGTTACGATTAACTGCTGAAGCTACGGATCAGGCGACTGCTGATCAATTATTGGCTGAATTAGAA
GCTAAAGTTCAAGCCCGGGTCGGTCAATACTTCTATGGTTATGGTGAACATAATTCTCTGGAGCAAGTTGTAGTTACTTT
GCTGAAAAAGCGTGGGTTGACGATCACCGCGGCGGAAAGTTTGACCGCTGGACTTTTTCAAAGTATGTTAGCTAATGTCA
GTGGTGCTTCTGATATTTTTAATGGGGGTTTTGTCACTTATTCCTTAGCTGAAAAAGCCAATTTATTACAGATCTCACCA
GAGTATCTGCATAAATACGGTGTCGTCAGTGAAGAAACCGCGATTGCAATGGCCCGACAAGCTAAGTTATTACTTAAATC
AGATATTGGAGTCTCCTTTACAGGGGTTGCTGGTCCTGATAAGTTAGAAGGTCAGCCAGCTGGTACGGTTTATATTGGTA
TTGCTTATCGTGATCAAATTCCGTTTGCACGTAAATTTGTTTTCTCACGCACAAGAAATTTTGTTCGGCAGCAAAGTGCG
TTAACTGGTTTTGACTTACTTTATCATCTGTTGGACGCCGATAAATAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

53.589

100

0.54
  cinA Streptococcus mitis NCTC 12261

52.358

100

0.535
  cinA Streptococcus mitis SK321

52.358

100

0.535
  cinA Streptococcus pneumoniae TIGR4

51.422

100

0.523
  cinA Streptococcus pneumoniae Rx1

51.422

100

0.523
  cinA Streptococcus pneumoniae R6

51.422

100

0.523
  cinA Streptococcus pneumoniae D39

51.185

100

0.52
  cinA Bacillus subtilis subsp. subtilis str. 168

47.932

99.036

0.475
  cinA Streptococcus suis isolate S10

42.995

99.759

0.429

Multiple sequence alignment