Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB3235_RS08600 | Genome accession | NZ_OZ061221 |
| Coordinates | 1765879..1766334 (-) | Length | 151 a.a. |
| NCBI ID | WP_367378125.1 | Uniprot ID | - |
| Organism | Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1736062..1775861 | 1765879..1766334 | within | 0 |
Gene organization within MGE regions
Location: 1736062..1775861
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3235_RS08370 | - | 1736062..1736256 (+) | 195 | WP_367378092.1 | CsbD family protein | - |
| AB3235_RS08375 | - | 1736761..1737336 (+) | 576 | WP_367378093.1 | hypothetical protein | - |
| AB3235_RS08380 | - | 1737401..1738516 (-) | 1116 | WP_367378094.1 | N-acetylmuramoyl-L-alanine amidase | - |
| AB3235_RS08385 | - | 1738530..1738742 (-) | 213 | WP_114524327.1 | phage holin | - |
| AB3235_RS08390 | - | 1738755..1738997 (-) | 243 | WP_301521358.1 | hemolysin XhlA family protein | - |
| AB3235_RS08395 | - | 1739049..1739984 (-) | 936 | WP_367378095.1 | hypothetical protein | - |
| AB3235_RS08400 | - | 1739985..1740137 (-) | 153 | WP_176281304.1 | hypothetical protein | - |
| AB3235_RS08405 | - | 1740138..1742759 (-) | 2622 | WP_367378096.1 | hypothetical protein | - |
| AB3235_RS08410 | - | 1742769..1743128 (-) | 360 | WP_367378097.1 | DUF6711 family protein | - |
| AB3235_RS08415 | - | 1743140..1747615 (-) | 4476 | WP_367378098.1 | hypothetical protein | - |
| AB3235_RS08420 | - | 1747602..1747967 (-) | 366 | WP_367378099.1 | hypothetical protein | - |
| AB3235_RS08425 | - | 1748000..1748374 (-) | 375 | WP_086304008.1 | DUF6096 family protein | - |
| AB3235_RS08430 | - | 1748450..1748884 (-) | 435 | WP_086304010.1 | phage tail tube protein | - |
| AB3235_RS08435 | - | 1748900..1749265 (-) | 366 | WP_086304012.1 | hypothetical protein | - |
| AB3235_RS08440 | - | 1749262..1749801 (-) | 540 | WP_367378558.1 | HK97 gp10 family phage protein | - |
| AB3235_RS08445 | - | 1749791..1750144 (-) | 354 | WP_367378559.1 | hypothetical protein | - |
| AB3235_RS08450 | - | 1750153..1750485 (-) | 333 | WP_086304016.1 | phage head-tail connector protein | - |
| AB3235_RS08455 | - | 1750489..1750641 (-) | 153 | WP_176281305.1 | hypothetical protein | - |
| AB3235_RS08460 | - | 1750654..1751676 (-) | 1023 | WP_367378100.1 | major capsid protein | - |
| AB3235_RS08465 | - | 1751695..1751979 (-) | 285 | WP_367378101.1 | hypothetical protein | - |
| AB3235_RS08470 | - | 1751999..1752634 (-) | 636 | WP_367378102.1 | DUF4355 domain-containing protein | - |
| AB3235_RS08475 | - | 1752804..1752992 (-) | 189 | WP_367378103.1 | hypothetical protein | - |
| AB3235_RS08480 | - | 1753132..1753326 (-) | 195 | WP_367378104.1 | hypothetical protein | - |
| AB3235_RS08485 | - | 1753402..1753656 (-) | 255 | WP_367378105.1 | hypothetical protein | - |
| AB3235_RS08490 | - | 1754120..1755352 (-) | 1233 | Protein_1659 | minor capsid protein | - |
| AB3235_RS08495 | - | 1755353..1755652 (-) | 300 | WP_367378106.1 | ribosomal-processing cysteine protease Prp | - |
| AB3235_RS08500 | - | 1755624..1757066 (-) | 1443 | WP_367378107.1 | phage portal protein | - |
| AB3235_RS08505 | - | 1757082..1758377 (-) | 1296 | WP_367378108.1 | PBSX family phage terminase large subunit | - |
| AB3235_RS08510 | - | 1758362..1759204 (-) | 843 | WP_367378109.1 | terminase small subunit | - |
| AB3235_RS08515 | - | 1759223..1759447 (-) | 225 | WP_367378110.1 | hypothetical protein | - |
| AB3235_RS08520 | - | 1760307..1760819 (-) | 513 | WP_178983068.1 | hypothetical protein | - |
| AB3235_RS08525 | - | 1760928..1761113 (-) | 186 | WP_367378111.1 | hypothetical protein | - |
| AB3235_RS08530 | - | 1761248..1761550 (+) | 303 | WP_367378112.1 | hypothetical protein | - |
| AB3235_RS08535 | - | 1761575..1761781 (-) | 207 | WP_367378113.1 | hypothetical protein | - |
| AB3235_RS08540 | - | 1761778..1762014 (-) | 237 | WP_367378114.1 | hypothetical protein | - |
| AB3235_RS08545 | - | 1762011..1762379 (-) | 369 | WP_367378115.1 | hypothetical protein | - |
| AB3235_RS08550 | - | 1762422..1762919 (-) | 498 | WP_367378116.1 | DUF1642 domain-containing protein | - |
| AB3235_RS08555 | - | 1762944..1763609 (-) | 666 | WP_367378117.1 | DNA cytosine methyltransferase | - |
| AB3235_RS08560 | - | 1763640..1763870 (-) | 231 | WP_010779940.1 | hypothetical protein | - |
| AB3235_RS08565 | - | 1763867..1764034 (-) | 168 | WP_367378118.1 | hypothetical protein | - |
| AB3235_RS08570 | - | 1764031..1764225 (-) | 195 | WP_367378119.1 | hypothetical protein | - |
| AB3235_RS08575 | - | 1764252..1764452 (-) | 201 | WP_367378120.1 | hypothetical protein | - |
| AB3235_RS08580 | - | 1764472..1764789 (-) | 318 | WP_367378121.1 | hypothetical protein | - |
| AB3235_RS08585 | - | 1764842..1765033 (-) | 192 | WP_367378122.1 | hypothetical protein | - |
| AB3235_RS08590 | - | 1765113..1765316 (-) | 204 | WP_367378123.1 | hypothetical protein | - |
| AB3235_RS08595 | - | 1765304..1765765 (-) | 462 | WP_367378124.1 | hypothetical protein | - |
| AB3235_RS08600 | ssb | 1765879..1766334 (-) | 456 | WP_367378125.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3235_RS08605 | - | 1766331..1767251 (-) | 921 | WP_367378126.1 | phage replisome organizer N-terminal domain-containing protein | - |
| AB3235_RS08610 | - | 1767267..1767887 (-) | 621 | WP_288228079.1 | DNA polymerase III subunit beta | - |
| AB3235_RS08615 | - | 1767900..1768568 (-) | 669 | WP_367378127.1 | putative HNHc nuclease | - |
| AB3235_RS08620 | - | 1768574..1769284 (-) | 711 | WP_367378128.1 | DUF1071 domain-containing protein | - |
| AB3235_RS08625 | - | 1769277..1769615 (-) | 339 | WP_367378129.1 | hypothetical protein | - |
| AB3235_RS08630 | - | 1769651..1769797 (-) | 147 | WP_367378130.1 | hypothetical protein | - |
| AB3235_RS08635 | - | 1769853..1770638 (+) | 786 | WP_367378131.1 | hypothetical protein | - |
| AB3235_RS08640 | - | 1770664..1770816 (-) | 153 | WP_367378132.1 | hypothetical protein | - |
| AB3235_RS08645 | - | 1770828..1771526 (-) | 699 | WP_367378133.1 | Rha family transcriptional regulator | - |
| AB3235_RS08650 | - | 1771545..1771754 (-) | 210 | WP_367378134.1 | hypothetical protein | - |
| AB3235_RS08655 | - | 1771767..1771949 (-) | 183 | WP_367378135.1 | hypothetical protein | - |
| AB3235_RS08660 | - | 1772245..1772556 (+) | 312 | WP_367378136.1 | helix-turn-helix domain-containing protein | - |
| AB3235_RS08665 | - | 1772574..1772978 (+) | 405 | WP_367378137.1 | ImmA/IrrE family metallo-endopeptidase | - |
| AB3235_RS08670 | - | 1773022..1773459 (+) | 438 | WP_367378138.1 | hypothetical protein | - |
| AB3235_RS08675 | - | 1773566..1774624 (+) | 1059 | WP_367378139.1 | Abi family protein | - |
| AB3235_RS08680 | - | 1774737..1775861 (+) | 1125 | WP_367378140.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 16739.27 Da Isoelectric Point: 6.4640
>NTDB_id=1165536 AB3235_RS08600 WP_367378125.1 1765879..1766334(-) (ssb) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
MINNVILVGRLTKAPDLRYTANGTGVATFTLAVNRNFTNQDGNREADFINCVIWRKSAETLANYAHKGTLLGVTGRIQTR
SYENQQGQRIYVTEVVAENFQLLESKGTNQQHKNNESNNSNGSQAANRNNNQSDDPFSGSSIDINNDDLPF
MINNVILVGRLTKAPDLRYTANGTGVATFTLAVNRNFTNQDGNREADFINCVIWRKSAETLANYAHKGTLLGVTGRIQTR
SYENQQGQRIYVTEVVAENFQLLESKGTNQQHKNNESNNSNGSQAANRNNNQSDDPFSGSSIDINNDDLPF
Nucleotide
Download Length: 456 bp
>NTDB_id=1165536 AB3235_RS08600 WP_367378125.1 1765879..1766334(-) (ssb) [Enterococcus gilvus isolate Enterococcus gilvus CIRM-BIA2700]
ATGATTAACAATGTAATTTTGGTCGGGCGATTAACAAAAGCTCCTGACCTACGATATACAGCGAATGGAACAGGTGTAGC
CACTTTCACATTAGCGGTGAACAGAAACTTTACGAATCAAGACGGAAACCGAGAAGCAGACTTCATCAATTGTGTGATTT
GGCGTAAATCTGCAGAAACTCTTGCTAACTATGCACACAAAGGAACGTTGCTTGGAGTCACTGGACGTATTCAAACACGC
AGCTATGAGAATCAACAGGGACAACGTATTTATGTGACTGAGGTTGTTGCTGAGAATTTTCAATTATTGGAATCAAAAGG
CACGAATCAACAACATAAAAATAACGAATCAAATAACTCAAATGGTAGTCAGGCGGCTAACAGAAATAACAATCAATCTG
ACGATCCTTTCAGTGGTTCATCAATTGACATCAATAACGATGATCTACCGTTCTGA
ATGATTAACAATGTAATTTTGGTCGGGCGATTAACAAAAGCTCCTGACCTACGATATACAGCGAATGGAACAGGTGTAGC
CACTTTCACATTAGCGGTGAACAGAAACTTTACGAATCAAGACGGAAACCGAGAAGCAGACTTCATCAATTGTGTGATTT
GGCGTAAATCTGCAGAAACTCTTGCTAACTATGCACACAAAGGAACGTTGCTTGGAGTCACTGGACGTATTCAAACACGC
AGCTATGAGAATCAACAGGGACAACGTATTTATGTGACTGAGGTTGTTGCTGAGAATTTTCAATTATTGGAATCAAAAGG
CACGAATCAACAACATAAAAATAACGAATCAAATAACTCAAATGGTAGTCAGGCGGCTAACAGAAATAACAATCAATCTG
ACGATCCTTTCAGTGGTTCATCAATTGACATCAATAACGATGATCTACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.824 |
100 |
0.662 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.233 |
100 |
0.629 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
44.371 |
100 |
0.444 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
44.371 |
100 |
0.444 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
43.709 |
100 |
0.437 |
| ssbB/cilA | Streptococcus mitis SK321 |
43.709 |
100 |
0.437 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.709 |
100 |
0.437 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
43.709 |
100 |
0.437 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
43.709 |
100 |
0.437 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
70.199 |
0.417 |