Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   YC6258_RS10625 Genome accession   NZ_CP007142
Coordinates   2454029..2455252 (-) Length   407 a.a.
NCBI ID   WP_044616970.1    Uniprot ID   A0A0C5VM58
Organism   Gynuella sunshinyii YC6258     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2449029..2460252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YC6258_RS10605 (YC6258_02401) argJ 2451101..2452324 (+) 1224 WP_044616966.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  YC6258_RS10610 yacG 2452352..2452570 (-) 219 WP_211264666.1 DNA gyrase inhibitor YacG -
  YC6258_RS10615 (YC6258_02403) coaE 2452567..2453166 (-) 600 WP_044616968.1 dephospho-CoA kinase -
  YC6258_RS10620 (YC6258_02404) pilD 2453163..2454029 (-) 867 WP_044616969.1 A24 family peptidase Machinery gene
  YC6258_RS10625 (YC6258_02405) pilC 2454029..2455252 (-) 1224 WP_044616970.1 type II secretion system F family protein Machinery gene
  YC6258_RS10630 (YC6258_02406) pilB 2455267..2456964 (-) 1698 WP_044616971.1 type IV-A pilus assembly ATPase PilB Machinery gene
  YC6258_RS10635 (YC6258_02407) - 2457219..2457719 (+) 501 WP_044616972.1 pilin -
  YC6258_RS10640 (YC6258_02408) - 2457796..2459412 (+) 1617 WP_144407611.1 Wzy polymerase domain-containing protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 43985.71 Da        Isoelectric Point: 9.9387

>NTDB_id=116473 YC6258_RS10625 WP_044616970.1 2454029..2455252(-) (pilC) [Gynuella sunshinyii YC6258]
MATAAKTFTYKYEGISRSGRSVKGELSAVNPAIAKAQLRKQGINVKKMVKKSQSLSFLGSGKKSIKSEDIAVFTRQMATM
MKAGVPLVQAFDIVAEGLSNKSMAELVTAMKADVSAGGTFGSALRKHPKYFDDLFCSLVESGEQAGALETMLDRVAIYKE
KSESIKRKVKSALKYPITVIVVAMIVTAVLLLKVVPVFAEMFNSFGAELPLPTQVVVSMSEWMQRNWYIGLGVIIVSTFL
FSTAMKRSIKFRHGVQRFLLRLPVFGPIFKQSAYARYARTLSTTFAAGVPLVDALDSAAGASGNIVYETAIQNVKHEVSS
GGELAGSMRAENVFPPMLVQMVSIGEQSGALDDMLAKAAAIYEEEVDTMVDGLTSMMEPMIMAFLGVVVGGLVVSMYLPI
FQIGNVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=116473 YC6258_RS10625 WP_044616970.1 2454029..2455252(-) (pilC) [Gynuella sunshinyii YC6258]
ATGGCAACGGCAGCAAAAACATTTACTTATAAATACGAAGGGATTTCCCGCTCTGGTCGTTCTGTCAAAGGCGAGTTAAG
TGCAGTCAATCCAGCAATAGCGAAGGCCCAACTAAGAAAGCAGGGCATTAATGTCAAGAAAATGGTGAAAAAGAGTCAAA
GCCTTTCTTTTCTTGGCTCTGGAAAAAAGTCCATTAAGTCTGAAGACATTGCGGTATTTACACGCCAAATGGCAACCATG
ATGAAAGCTGGCGTACCCCTGGTACAAGCGTTTGATATTGTTGCAGAAGGTTTGTCAAACAAAAGCATGGCAGAACTCGT
TACGGCCATGAAAGCAGATGTATCTGCTGGTGGCACATTTGGAAGCGCCCTGAGAAAACATCCAAAATATTTTGATGATT
TATTTTGTAGCTTAGTGGAGTCTGGAGAGCAAGCCGGTGCCCTCGAAACCATGCTGGATCGTGTCGCTATATACAAAGAA
AAAAGTGAATCCATAAAACGTAAAGTTAAAAGTGCGCTCAAATACCCCATTACAGTTATAGTAGTGGCCATGATTGTCAC
TGCAGTTCTACTTCTTAAAGTTGTACCGGTTTTTGCCGAAATGTTTAATAGTTTTGGCGCTGAGTTACCACTTCCCACTC
AAGTTGTTGTCTCCATGTCGGAATGGATGCAGCGCAATTGGTATATAGGGCTAGGTGTCATTATCGTCAGTACTTTTCTT
TTTTCTACAGCCATGAAGCGATCAATAAAATTTCGTCATGGAGTTCAAAGGTTTTTATTACGGTTACCTGTATTTGGTCC
AATATTTAAACAATCTGCCTATGCTCGTTATGCCAGAACACTATCGACAACATTTGCTGCTGGTGTACCTCTAGTAGATG
CACTGGATTCAGCCGCAGGGGCATCTGGTAATATTGTCTATGAGACCGCAATCCAAAATGTCAAACATGAGGTTTCTTCG
GGTGGTGAGCTTGCAGGCTCGATGCGTGCAGAGAACGTCTTTCCACCAATGCTGGTACAAATGGTTTCTATTGGTGAACA
GTCAGGTGCGTTGGATGACATGCTCGCGAAGGCTGCTGCTATTTATGAGGAAGAGGTAGATACCATGGTAGATGGTCTGA
CCAGTATGATGGAGCCAATGATTATGGCTTTTCTGGGAGTCGTTGTTGGTGGCTTGGTTGTGTCCATGTATCTACCTATT
TTCCAGATCGGAAACGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-399)

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C5VM58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.158

99.263

0.587
  pilC Acinetobacter baumannii D1279779

59.398

98.034

0.582
  pilC Acinetobacter baylyi ADP1

59.296

97.789

0.58
  pilC Legionella pneumophila strain ERS1305867

51.75

98.28

0.509
  pilG Neisseria gonorrhoeae MS11

45.926

99.509

0.457
  pilG Neisseria meningitidis 44/76-A

45.679

99.509

0.455
  pilC Vibrio campbellii strain DS40M4

42.25

98.28

0.415
  pilC Vibrio cholerae strain A1552

40.852

98.034

0.4
  pilC Thermus thermophilus HB27

35.507

100

0.361

Multiple sequence alignment