Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABNT83_RS01885 Genome accession   NZ_OZ026884
Coordinates   394543..395754 (-) Length   403 a.a.
NCBI ID   WP_348758752.1    Uniprot ID   -
Organism   Candidatus Methylocalor cossyra isolate MeCH1-AG     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 389543..400754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNT83_RS01860 (MECH1_V1_0385) - 390320..391915 (+) 1596 WP_348758747.1 AAA family ATPase -
  ABNT83_RS01865 (MECH1_V1_0386) - 391912..392115 (-) 204 WP_348758748.1 DNA gyrase inhibitor YacG -
  ABNT83_RS01870 (MECH1_V1_0387) zapD 392140..392946 (-) 807 WP_348758749.1 cell division protein ZapD -
  ABNT83_RS01875 (MECH1_V1_0388) coaE 393000..393638 (-) 639 WP_348758750.1 dephospho-CoA kinase -
  ABNT83_RS01880 (MECH1_V1_0389) - 393648..394523 (-) 876 WP_348758751.1 prepilin peptidase -
  ABNT83_RS01885 (MECH1_V1_0390) pilC 394543..395754 (-) 1212 WP_348758752.1 type II secretion system F family protein Machinery gene
  ABNT83_RS01890 (MECH1_V1_0391) pilB 395760..397472 (-) 1713 WP_348758753.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABNT83_RS01895 (MECH1_V1_0392) - 397566..398282 (-) 717 WP_348758754.1 retropepsin-like aspartic protease -
  ABNT83_RS01900 (MECH1_V1_0393) glgA 398294..400444 (-) 2151 WP_348758755.1 glycogen synthase GlgA -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43934.97 Da        Isoelectric Point: 9.7935

>NTDB_id=1163281 ABNT83_RS01885 WP_348758752.1 394543..395754(-) (pilC) [Candidatus Methylocalor cossyra isolate MeCH1-AG]
MAKDELIAFVWEGLDRNGARLKGELVSRSEVIARTELRRQGIKVAKIKKKPKPLFRSTKKVVPKDIAVFSRQLATMLAAG
VPLVQAFEIVGRGHEKPSMQDLLLNIKTDLEGGSTLAEALRKHPAHFDELFCNLVHAGEQAGVLETLLHKIADYKEKTES
IKAKIKKALAYPAAVVVVACIVTAILLIFVVPQFEELFKGFGADLPAFTKMVIGMSRFLQEYWYIVLGIMVAAGYIFTKL
RQRSPAFNHALDRAVLQIPVIGSVMHKAAIARFARTLSTMSAAGVPLVEALRSVAGATGNVVYATAVLRMRDEVSTGTQL
QLSMRQANLFPNMVVQMVAIGEESGSLDSMLAKVAEFYEEEVDNAVDSLSSLIEPMIMAVLGVLVGGLVIAMYLPIFKLG
AAI

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=1163281 ABNT83_RS01885 WP_348758752.1 394543..395754(-) (pilC) [Candidatus Methylocalor cossyra isolate MeCH1-AG]
ATGGCCAAAGATGAACTGATCGCATTCGTATGGGAGGGTTTGGATCGCAACGGTGCCCGCCTGAAGGGCGAGCTCGTTTC
GCGCAGCGAAGTGATCGCGCGCACCGAGCTCCGGCGCCAGGGGATCAAGGTCGCCAAGATCAAGAAAAAGCCCAAGCCCT
TGTTCCGCTCCACCAAGAAGGTGGTACCCAAGGACATCGCGGTGTTCAGCCGCCAATTGGCGACCATGCTGGCGGCCGGG
GTGCCCTTGGTGCAGGCGTTCGAGATCGTCGGGCGCGGGCACGAGAAGCCCAGCATGCAGGATCTGCTCCTCAACATTAA
AACCGACCTCGAGGGGGGCTCCACCCTAGCCGAGGCGCTTCGCAAGCATCCGGCCCATTTTGACGAGCTGTTCTGCAACC
TGGTCCATGCCGGCGAACAGGCCGGCGTGCTGGAAACGCTGTTGCACAAGATCGCCGACTACAAGGAGAAAACCGAGTCC
ATCAAGGCCAAGATCAAGAAGGCGCTGGCCTATCCCGCGGCGGTGGTGGTGGTGGCCTGTATCGTCACGGCGATTCTGCT
GATCTTTGTGGTCCCACAGTTCGAGGAACTGTTCAAGGGCTTCGGTGCCGATTTGCCGGCATTCACAAAAATGGTCATCG
GCATGTCGAGGTTCTTGCAAGAGTACTGGTATATCGTCTTGGGGATCATGGTCGCGGCCGGCTACATCTTTACCAAGCTG
CGTCAGCGTTCTCCGGCTTTCAACCACGCTCTGGATCGGGCGGTGCTGCAGATCCCGGTGATCGGCTCGGTCATGCATAA
GGCGGCGATCGCGCGCTTCGCTAGGACCCTCTCCACCATGTCGGCAGCTGGGGTGCCCCTGGTGGAAGCCCTGCGTTCGG
TGGCCGGCGCCACCGGGAACGTGGTGTACGCCACCGCGGTGCTGCGCATGCGCGATGAAGTATCGACCGGAACACAGCTG
CAGCTATCCATGCGGCAAGCTAACCTGTTTCCGAACATGGTGGTTCAAATGGTCGCGATCGGGGAAGAATCGGGTTCCTT
GGACAGCATGTTGGCTAAGGTCGCCGAGTTCTACGAAGAAGAAGTCGACAACGCCGTGGATTCGTTGAGCAGCCTCATCG
AGCCCATGATCATGGCGGTGCTCGGTGTGCTGGTTGGGGGATTGGTGATCGCGATGTATTTGCCGATCTTCAAGCTGGGC
GCCGCGATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

60.15

99.007

0.596
  pilC Pseudomonas stutzeri DSM 10701

58.734

98.015

0.576
  pilC Acinetobacter baylyi ADP1

57.179

98.511

0.563
  pilC Acinetobacter baumannii D1279779

56.675

98.511

0.558
  pilG Neisseria meningitidis 44/76-A

46.97

98.263

0.462
  pilG Neisseria gonorrhoeae MS11

46.717

98.263

0.459
  pilC Vibrio cholerae strain A1552

44.162

97.767

0.432
  pilC Vibrio campbellii strain DS40M4

42.821

98.511

0.422
  pilC Thermus thermophilus HB27

39.25

99.256

0.39

Multiple sequence alignment