Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   U9J37_RS13845 Genome accession   NZ_OY808997
Coordinates   2971486..2972712 (-) Length   408 a.a.
NCBI ID   WP_005475684.1    Uniprot ID   -
Organism   Vibrio sp. 16 isolate VDT1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2966486..2977712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9J37_RS13805 (VDT1_2812) rpsP 2966640..2966888 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  U9J37_RS13810 (VDT1_2813) rimM 2966916..2967464 (+) 549 WP_005476454.1 ribosome maturation factor RimM -
  U9J37_RS13815 (VDT1_2814) trmD 2967492..2968241 (+) 750 WP_005476521.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  U9J37_RS13820 (VDT1_2815) rplS 2968291..2968644 (+) 354 WP_005476458.1 50S ribosomal protein L19 -
  U9J37_RS13825 (VDT1_2816) yacG 2968930..2969124 (-) 195 WP_038191328.1 DNA gyrase inhibitor YacG -
  U9J37_RS13830 (VDT1_2817) zapD 2969176..2969916 (-) 741 WP_005476491.1 cell division protein ZapD -
  U9J37_RS13835 (VDT1_2818) coaE 2969951..2970559 (-) 609 WP_322413840.1 dephospho-CoA kinase -
  U9J37_RS13840 (VDT1_2819) pilD 2970561..2971430 (-) 870 WP_039477926.1 prepilin peptidase Machinery gene
  U9J37_RS13845 (VDT1_2820) pilC 2971486..2972712 (-) 1227 WP_005475684.1 type II secretion system F family protein Machinery gene
  U9J37_RS13850 (VDT1_2821) pilB 2972725..2974413 (-) 1689 WP_043887354.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U9J37_RS13855 (VDT1_2822) pilA 2974413..2974814 (-) 402 WP_005475654.1 type IV pilin protein Machinery gene
  U9J37_RS13860 (VDT1_2823) nadC 2975071..2975958 (-) 888 WP_005475682.1 carboxylating nicotinate-nucleotide diphosphorylase -
  U9J37_RS13865 (VDT1_2824) ampD 2976100..2976654 (+) 555 WP_005475679.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  U9J37_RS13870 (VDT1_2825) fldB 2976708..2977229 (-) 522 WP_005475668.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45417.72 Da        Isoelectric Point: 10.3547

>NTDB_id=1161998 U9J37_RS13845 WP_005475684.1 2971486..2972712(-) (pilC) [Vibrio sp. 16 isolate VDT1]
MKNRYKNQLKSFHWRGLNSIGKPVSGQLLALTENEVRDKLKEQHIQVKKLKKRNLSLYKRITQRVKRKDITILTRQLATM
LMTGVPLIQALKLVADNHRKAEMKSILSQIVKGVESGTPLSKTLRTASTHFDTLYVDLVATGEQSGNLAEVFERIATYRE
KSEQLKAKVIKALIYPSMVVITALSVTYLMLTVVIPEFESMFSGFGADLPWFTAQVLILSHWVQSYSGMVFMALAIAFLL
LKLGRKKSFRIQLATSRASLNIPIIGTIISKASIAKFSRTLATSFSAGIPILSCLKTSAKTANNIHYQNAIEQVYADTAA
GMPIYIAMRNSQTFPEMVLQMVMIGEESGSLDDMLNKVATIYEFEIDNTVDNLGKVLEPMIIIFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1161998 U9J37_RS13845 WP_005475684.1 2971486..2972712(-) (pilC) [Vibrio sp. 16 isolate VDT1]
GTGAAAAATCGATACAAGAACCAATTAAAAAGCTTCCATTGGCGAGGTCTCAATAGCATCGGTAAACCAGTTTCAGGTCA
ATTATTAGCGCTGACCGAAAACGAGGTGCGAGACAAACTGAAAGAACAACATATCCAAGTCAAAAAGCTGAAAAAGCGCA
ATCTTTCCTTATACAAACGCATAACGCAGCGCGTGAAACGCAAAGACATTACGATTTTAACGAGGCAGTTAGCGACGATG
CTGATGACGGGCGTGCCGTTGATTCAGGCTCTTAAGTTGGTCGCAGATAATCACCGTAAAGCCGAGATGAAATCGATTTT
GTCCCAAATAGTGAAAGGGGTTGAATCTGGCACACCACTATCAAAAACGCTGCGAACAGCGAGCACGCATTTTGACACCT
TATACGTAGACCTTGTCGCAACCGGTGAACAATCTGGTAACCTAGCCGAAGTGTTTGAACGAATTGCAACTTATCGAGAA
AAGTCAGAACAACTGAAAGCAAAAGTAATCAAAGCTCTGATCTACCCATCCATGGTTGTGATTACCGCATTATCGGTCAC
TTATTTAATGTTAACCGTCGTCATACCGGAATTTGAATCAATGTTTTCTGGATTTGGCGCTGACCTACCTTGGTTTACCG
CTCAGGTTCTTATTCTCTCTCACTGGGTTCAATCTTATTCAGGCATGGTGTTTATGGCGCTTGCCATCGCGTTTTTGCTG
TTAAAACTCGGACGAAAAAAATCCTTTCGCATTCAATTGGCAACAAGTCGAGCAAGCTTAAACATCCCAATAATTGGTAC
CATCATTAGCAAAGCTTCCATTGCGAAGTTTAGCCGAACGTTGGCAACCAGTTTTAGTGCTGGCATCCCGATACTTTCAT
GCTTAAAAACATCAGCGAAAACCGCCAATAATATTCACTATCAAAACGCGATCGAACAAGTTTATGCCGATACCGCAGCA
GGCATGCCGATATACATTGCGATGCGAAACTCACAAACCTTTCCTGAAATGGTGCTGCAAATGGTGATGATTGGCGAAGA
ATCGGGAAGCTTAGATGACATGCTCAATAAAGTCGCCACCATCTATGAGTTTGAAATTGATAACACCGTCGATAATCTAG
GAAAAGTCCTAGAGCCTATGATTATTATTTTCCTTGGTGTGGTAGTAGGAGGCTTAGTGGTCGCAATGTACTTGCCGATC
TTTAACTTAATGAGTGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

76.75

98.039

0.752
  pilC Vibrio campbellii strain DS40M4

69.059

99.02

0.684
  pilC Acinetobacter baumannii D1279779

41.75

98.039

0.409
  pilC Acinetobacter baylyi ADP1

41.604

97.794

0.407
  pilC Legionella pneumophila strain ERS1305867

41.353

97.794

0.404
  pilG Neisseria gonorrhoeae MS11

40

99.265

0.397
  pilG Neisseria meningitidis 44/76-A

40

99.265

0.397
  pilC Pseudomonas stutzeri DSM 10701

40.404

97.059

0.392

Multiple sequence alignment