Detailed information NTG1161997

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: U9J37_RS13840
• Genome accession: NZ_OY808997
• Coordinates: 2970561..2971430 (-)
• Length: 289 a.a.
• NCBI ID: WP_039477926.1
• Uniprot ID: -
• Organism: Vibrio sp. 16 isolate VDT1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2965561..2976430

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U9J37_RS13805 (VDT1_2812)	rpsP	2966640..2966888 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
U9J37_RS13810 (VDT1_2813)	rimM	2966916..2967464 (+)	549	WP_005476454.1	ribosome maturation factor RimM	-
U9J37_RS13815 (VDT1_2814)	trmD	2967492..2968241 (+)	750	WP_005476521.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
U9J37_RS13820 (VDT1_2815)	rplS	2968291..2968644 (+)	354	WP_005476458.1	50S ribosomal protein L19	-
U9J37_RS13825 (VDT1_2816)	yacG	2968930..2969124 (-)	195	WP_038191328.1	DNA gyrase inhibitor YacG	-
U9J37_RS13830 (VDT1_2817)	zapD	2969176..2969916 (-)	741	WP_005476491.1	cell division protein ZapD	-
U9J37_RS13835 (VDT1_2818)	coaE	2969951..2970559 (-)	609	WP_322413840.1	dephospho-CoA kinase	-
U9J37_RS13840 (VDT1_2819)	pilD	2970561..2971430 (-)	870	WP_039477926.1	prepilin peptidase	Machinery gene
U9J37_RS13845 (VDT1_2820)	pilC	2971486..2972712 (-)	1227	WP_005475684.1	type II secretion system F family protein	Machinery gene
U9J37_RS13850 (VDT1_2821)	pilB	2972725..2974413 (-)	1689	WP_043887354.1	type IV-A pilus assembly ATPase PilB	Machinery gene
U9J37_RS13855 (VDT1_2822)	pilA	2974413..2974814 (-)	402	WP_005475654.1	type IV pilin protein	Machinery gene
U9J37_RS13860 (VDT1_2823)	nadC	2975071..2975958 (-)	888	WP_005475682.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32627.68 Da
• Isoelectric Point: 8.0176

>NTDB_id=1161997 U9J37_RS13840 WP_039477926.1 2970561..2971430(-) (pilD) [Vibrio sp. 16 isolate VDT1]
MEQFHYYPWLFPTMATVFGLIIGSFLNVVIHRLPKIMEREWRQECAESFPEYNIEAPKGTYNLSVPRSTCPKCHTPIRII
DNIPVVSWLLLRGKCRQCDNPISARYPLIELLSGGLSFVVSYQLGFSYFTLALLIFTFVLIAATFIDLDTMLLPDSLTLP
LTWAGIALALFQISPISLQDSVIGAMAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAWLGWQQLPMLILFSSLVGL
VFGLIQLRLKRQGIDKAFPFGPYLAIAGWISMMWGSQIWGFYLTHFLGL

Nucleotide

• Length: 870 bp

>NTDB_id=1161997 U9J37_RS13840 WP_039477926.1 2970561..2971430(-) (pilD) [Vibrio sp. 16 isolate VDT1]
ATCGAGCAATTTCATTACTACCCTTGGTTATTTCCAACCATGGCGACCGTTTTTGGCCTTATCATTGGTAGTTTTCTCAA
CGTGGTCATACATCGTCTACCGAAAATAATGGAGCGAGAGTGGCGACAAGAGTGCGCCGAAAGCTTTCCCGAGTACAACA
TAGAAGCGCCAAAGGGAACTTATAACCTCAGTGTTCCTCGCTCAACTTGCCCTAAATGCCACACCCCAATCCGCATTATA
GATAATATTCCTGTTGTAAGTTGGTTGCTGCTAAGAGGGAAGTGTCGACAGTGTGATAATCCAATCAGCGCCCGCTACCC
TCTGATTGAGCTGCTCAGTGGCGGCTTAAGCTTTGTTGTGTCGTATCAACTTGGCTTTAGTTACTTCACACTCGCCCTAC
TGATTTTTACGTTCGTATTGATTGCGGCAACCTTTATCGACCTCGACACCATGCTGCTGCCAGATTCCCTTACCTTGCCC
CTCACTTGGGCGGGTATCGCCTTGGCCCTGTTTCAAATAAGCCCTATCTCACTGCAAGACTCGGTTATTGGCGCGATGGC
TGGTTATCTATCCCTTTGGTCGGTATATTGGCTGTTTAAACTAGCTACCGGTAAAGAAGGTATGGGTTACGGTGACTTTA
AACTGCTGGCGGCTCTAGGCGCTTGGCTCGGATGGCAACAACTTCCCATGCTTATCCTATTCTCTTCTTTAGTCGGACTG
GTATTTGGCCTGATTCAACTGCGACTAAAACGCCAAGGTATCGATAAAGCCTTTCCATTTGGCCCTTACTTGGCGATAGC
AGGTTGGATAAGCATGATGTGGGGCTCTCAGATATGGGGCTTTTATCTGACTCATTTTTTAGGACTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	75.779	100	0.758
pilD	Vibrio cholerae strain A1552	70.139	99.654	0.699
pilD	Neisseria gonorrhoeae MS11	50.545	95.156	0.481
pilD	Acinetobacter nosocomialis M2	52.273	91.349	0.478
pilD	Acinetobacter baumannii D1279779	52.273	91.349	0.478