Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   U8955_RS08690 Genome accession   NZ_OY769914
Coordinates   1730103..1732082 (-) Length   659 a.a.
NCBI ID   WP_038804568.1    Uniprot ID   A0A7T3DZI6
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1725103..1737082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS08670 (SDENT7746_08700) amiF 1725598..1726527 (-) 930 WP_038804566.1 ATP-binding cassette domain-containing protein Regulator
  U8955_RS08675 (SDENT7746_08705) amiE 1726538..1727605 (-) 1068 WP_038804567.1 ABC transporter ATP-binding protein Regulator
  U8955_RS08680 (SDENT7746_08710) amiD 1727614..1728540 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  U8955_RS08685 (SDENT7746_08715) amiC 1728540..1730036 (-) 1497 WP_000759921.1 ABC transporter permease Regulator
  U8955_RS08690 (SDENT7746_08720) amiA 1730103..1732082 (-) 1980 WP_038804568.1 peptide ABC transporter substrate-binding protein Regulator
  U8955_RS08700 (SDENT7746_08730) - 1732608..1733939 (-) 1332 WP_038804569.1 hemolysin family protein -
  U8955_RS08705 (SDENT7746_08735) endA 1734080..1734904 (-) 825 WP_038804570.1 DNA/RNA non-specific endonuclease Machinery gene
  U8955_RS08710 (SDENT7746_08740) - 1734945..1735136 (-) 192 WP_000791880.1 DNA-directed RNA polymerase subunit beta -
  U8955_RS08715 (SDENT7746_08745) murA 1735126..1736406 (-) 1281 WP_038804571.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  U8955_RS08720 - 1736429..1736659 (-) 231 WP_080563327.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72928.96 Da        Isoelectric Point: 4.8396

>NTDB_id=1161742 U8955_RS08690 WP_038804568.1 1730103..1732082(-) (amiA) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MKKSRVFVTAGIALLATGVLAACGSSKSSDSTAPKSYGYVYSADPETLDYLISGKQSTKIATSNGIDGLFTNDKYGNLTP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADNKSEALYLAEDSVKGLADYKAGNNKDFSSV
GVKAVDDYTLEYTLNKPEPYWNSKMAYSIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNEQYW
DKDNVHLDKVTLAYYDGSDQESIERNFTSGAYSYARLYPTSSNYSKVEETYKENIFYTPSGPGVGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQVNGKEGAPRAVRNLFVKPDFVSAGEKTFGDLVTDKMATYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDVPVDQTAKNYIARIQSFKQSVETVLGEGNVVIDIQQVSKDE
FTNITYYAANAAAEDWDLSGAVAWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAAKETS
DLNVRYEKYAAAQAWLTDSSLFLPAMSSTGAAPFISRVVPFTASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1161742 U8955_RS08690 WP_038804568.1 1730103..1732082(-) (amiA) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGAAAAAAAGTAGAGTATTTGTTACAGCAGGGATTGCTTTGCTGGCAACTGGCGTTCTCGCTGCTTGTGGTTCTTCAAA
ATCATCTGATTCAACAGCTCCAAAATCCTATGGTTATGTTTATTCAGCTGACCCAGAAACATTGGATTACCTCATTTCAG
GGAAACAAAGTACCAAAATTGCCACTTCAAATGGTATCGATGGTCTCTTTACAAATGATAAATATGGGAATTTGACTCCT
GCAGTTGCAGAAGACTGGTCAGTCTCAAAAGATGGGTTGACTTATACCTACAAGATTCGTAAAGGTGTCAAATGGATGAC
ATCAGATGGCGAAGAGTATGCTGAAGTGACAGCTAAAGACTTCGTAAATGGCTTGAAACACGCAGCTGATAACAAGTCTG
AAGCACTTTATCTAGCAGAAGATTCAGTTAAAGGTCTAGCTGACTATAAAGCTGGAAACAATAAAGACTTTTCTTCAGTA
GGTGTGAAAGCAGTTGACGATTATACACTTGAGTATACTTTGAACAAACCCGAACCATACTGGAACTCTAAGATGGCTTA
TTCAATCTTCTGGCCATTGAACGAAGAATTTGAAAAATCAAAAGGATCTGACTTTGCTAAAGCGACTGACCCTACATCAT
TGCTTTACAATGGACCATTCTTGCTGAAAGGTTTGACTGCTAAGTCTTCTATCGAGTTCGCTAAAAATGAACAATACTGG
GATAAAGACAATGTTCATCTTGATAAAGTAACACTTGCTTACTATGATGGTTCAGACCAAGAGTCTATTGAACGTAACTT
TACAAGTGGAGCTTATAGCTATGCCCGTCTTTACCCAACAAGTTCAAACTACTCTAAAGTAGAAGAAACCTACAAGGAAA
ATATCTTCTACACCCCATCAGGACCTGGTGTTGGTGGTTTGGGTGTGAATATTGACCGCCAAGGTTACAAATACACTTCT
AAGACAACTGACGAAGAGAAGACTTCTACTAAGAAAGCCCTTCTTAACAAGGACTTCCGTCAAGCCTTGAACTTTGCCTT
TGACCGTACGTCTTACTCAGCTCAAGTAAATGGTAAAGAAGGTGCTCCTCGTGCCGTTCGTAACCTCTTTGTAAAACCTG
ACTTTGTCTCTGCTGGCGAAAAAACTTTCGGTGACTTGGTGACTGATAAGATGGCTACTTACGGTGATGAATGGAAGAAC
GTAAACTTTGCTGATGGTCAAGATGGACTCTTCAACGCCGATAAAGCCAAAGCTGAATTTGCGAAAGCCAAAACAGCATT
GGAAGCAGAAGGTGTAAAATTCCCTATCCATTTGGATGTCCCAGTAGACCAAACAGCTAAAAACTATATCGCACGTATTC
AATCCTTCAAACAATCCGTTGAAACAGTGCTTGGTGAAGGCAATGTAGTCATCGATATCCAACAAGTTTCTAAAGATGAG
TTTACTAATATTACCTACTATGCGGCGAATGCAGCAGCAGAAGATTGGGATCTCTCAGGAGCAGTTGCATGGAACCCAGA
CTATGAAGATCCGTCAACTTACCTTGATATCTTGAAAACAACGAATGCTGAACAAACAAAAACATACATGGGTTACGAAG
GTGCAGATAACGCTGCGGCGGCTCAAGTTGGTTTGAAAGAATACGATAAACTAGTTGATGAAGCTGCTAAAGAAACAAGC
GATTTGAATGTTCGTTATGAAAAATACGCGGCTGCTCAAGCTTGGTTGACAGATAGCTCACTCTTCTTGCCAGCTATGTC
ATCAACTGGTGCTGCACCATTCATTTCTCGTGTTGTACCATTCACAGCATCATACAGCCAGTCTGGAGATAAGGGCTCAG
ATGTATACTTCAAGTATATTCAGTTACAAGACAAGGTAGTAACCAAGGCTGACTATGAACAAGCTCGTGAGAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3DZI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.527

100

0.675
  amiA3 Streptococcus thermophilus LMG 18311

66.97

100

0.671
  amiA3 Streptococcus thermophilus LMD-9

66.818

100

0.669

Multiple sequence alignment