Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   U8955_RS08675 Genome accession   NZ_OY769914
Coordinates   1726538..1727605 (-) Length   355 a.a.
NCBI ID   WP_038804567.1    Uniprot ID   A0A7T2ZWX7
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1721538..1732605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS08655 (SDENT7746_08685) - 1721813..1722316 (-) 504 WP_038804563.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  U8955_RS08660 (SDENT7746_08690) trkA 1722717..1724066 (+) 1350 WP_038804564.1 Trk system potassium transporter TrkA -
  U8955_RS08665 (SDENT7746_08695) - 1724070..1725509 (+) 1440 WP_038804565.1 TrkH family potassium uptake protein -
  U8955_RS08670 (SDENT7746_08700) amiF 1725598..1726527 (-) 930 WP_038804566.1 ATP-binding cassette domain-containing protein Regulator
  U8955_RS08675 (SDENT7746_08705) amiE 1726538..1727605 (-) 1068 WP_038804567.1 ABC transporter ATP-binding protein Regulator
  U8955_RS08680 (SDENT7746_08710) amiD 1727614..1728540 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  U8955_RS08685 (SDENT7746_08715) amiC 1728540..1730036 (-) 1497 WP_000759921.1 ABC transporter permease Regulator
  U8955_RS08690 (SDENT7746_08720) amiA 1730103..1732082 (-) 1980 WP_038804568.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39569.15 Da        Isoelectric Point: 4.6417

>NTDB_id=1161739 U8955_RS08675 WP_038804567.1 1726538..1727605(-) (amiE) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MTKENNVILTARDIVVEFDVRDKVLTAIRGVSLDLIEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIDYRGQDL
TALNSNKEWEKIRGAKIATIFQDPMTSLDPINTIGSQITEVIVKHQGKTAKEAKEMAIDYMNKVGIPDAEKRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKTLQNEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYTELKGDAFALRSDYAMQIDFEQKAPQFSVTDTHWAK
TWLLHENAPKVEKPGVIADLHDKIRDKMGFAHLED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1161739 U8955_RS08675 WP_038804567.1 1726538..1727605(-) (amiE) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGACAAAAGAAAATAATGTAATTTTGACTGCTCGTGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTTCTGACGGC
TATCCGAGGAGTTTCTCTAGACCTGATTGAAGGAGAAGTTCTTGCCTTGGTAGGTGAGTCTGGTTCTGGTAAATCTGTTT
TAACAAAAACCTTTACAGGGATGTTAGAAGACAATGGACGTATTGCCCAAGGAAGCATCGACTATCGTGGACAAGACTTG
ACCGCCTTGAATTCTAACAAGGAATGGGAGAAGATTCGTGGTGCTAAAATTGCGACCATCTTCCAGGATCCAATGACAAG
TTTGGATCCAATCAATACAATCGGTAGCCAAATCACTGAAGTTATCGTTAAACACCAAGGAAAAACAGCTAAGGAAGCCA
AAGAGATGGCAATCGACTATATGAACAAAGTCGGAATTCCAGACGCTGAAAAACGTTTTGACGAGTATCCTTTCCAATAT
TCTGGAGGGATGCGCCAACGTATCGTTATCGCGATTGCCCTTGCATGTCGTCCAGATATCTTGATCTGTGACGAGCCAAC
AACGGCTCTTGATGTAACCATTCAAGCGCAAATCATTGATTTGCTTAAAACCTTGCAAAATGAGTACCACTTTACCATTA
TCTTTATCACCCATGACCTTGGTGTGGTAGCAAGTATTGCGGATAAGGTAGCAGTTATGTATGCTGGGGAAATTGTAGAA
TACGGTACTGTTGAGGAAGTCTTCTACGATCCACGTCATCCATATACTTGGAGTCTCTTGTCCAGTTTGCCACAGCTTGC
TGATGATAAAGGAGAATTGTACTCTATCCCAGGAACACCACCGTCTCTTTATACTGAGTTGAAAGGTGATGCCTTTGCCC
TTCGTTCAGATTATGCGATGCAAATTGACTTTGAACAGAAAGCACCTCAGTTTTCAGTCACTGATACTCACTGGGCTAAG
ACTTGGTTGCTTCATGAGAATGCTCCTAAAGTTGAAAAACCTGGGGTCATCGCAGATTTGCATGACAAGATTCGTGATAA
AATGGGCTTTGCTCATCTAGAAGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7T2ZWX7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.197

100

0.862

  amiE Streptococcus thermophilus LMG 18311

84.225

100

0.842

  amiE Streptococcus thermophilus LMD-9

84.225

100

0.842

  oppD Streptococcus mutans UA159

54.261

99.155

0.538


Multiple sequence alignment