Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   U8955_RS08685 Genome accession   NZ_OY769914
Coordinates   1728540..1730036 (-) Length   498 a.a.
NCBI ID   WP_000759921.1    Uniprot ID   A0A7T3DYK8
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1723540..1735036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS08665 (SDENT7746_08695) - 1724070..1725509 (+) 1440 WP_038804565.1 TrkH family potassium uptake protein -
  U8955_RS08670 (SDENT7746_08700) amiF 1725598..1726527 (-) 930 WP_038804566.1 ATP-binding cassette domain-containing protein Regulator
  U8955_RS08675 (SDENT7746_08705) amiE 1726538..1727605 (-) 1068 WP_038804567.1 ABC transporter ATP-binding protein Regulator
  U8955_RS08680 (SDENT7746_08710) amiD 1727614..1728540 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  U8955_RS08685 (SDENT7746_08715) amiC 1728540..1730036 (-) 1497 WP_000759921.1 ABC transporter permease Regulator
  U8955_RS08690 (SDENT7746_08720) amiA 1730103..1732082 (-) 1980 WP_038804568.1 peptide ABC transporter substrate-binding protein Regulator
  U8955_RS08700 (SDENT7746_08730) - 1732608..1733939 (-) 1332 WP_038804569.1 hemolysin family protein -
  U8955_RS08705 (SDENT7746_08735) endA 1734080..1734904 (-) 825 WP_038804570.1 DNA/RNA non-specific endonuclease Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55692.04 Da        Isoelectric Point: 9.1164

>NTDB_id=1161741 U8955_RS08685 WP_000759921.1 1728540..1730036(-) (amiC) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQEKAS
TMDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYSNLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLVISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1161741 U8955_RS08685 WP_000759921.1 1728540..1730036(-) (amiC) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGGTGTCTATCTTCTTGGTGACAACCTTGACCTACACGATTAT
CTATACGATGGTTCCTCGAAAACTGATTTTCAAGCAGGATACCAACTATAACAAAATTGCAACGACGCCAGATAAACGGG
ATAATTATGAAAATACCGTTTATGAGCGGATGGGCTATATCGAGTACTACGATACCAAGGAGTTGCAAGAAAAAGCGAGC
ACAATGGACTCATCTGTAACAGTAGATGCCAATGATACAAATAAGGCAATCTACGAAAAATACATCAACCAACTCGGTAA
TGGTTGGACACTCGGTGTATTCTCAGAAAGTGGTCAATTCTACGCTACGCGTGAAATTCCAATTTTTGAACGTGTTTTCA
AATTCTACTCGAACTTGCTCGACATTGATCATACAAACAAGATTCAAGACCCTGAAAATCCAAACTTGGAACGTTATCTT
CGTTTTGAAAATGACCCCGCTATCGGTTGGTCATTGGTTGGTTCAGGTACAAAACATAAATATCTTTTGTATTTCAATAA
TCAGTTCCCATTTGTACACCAAAACTTTGTGAACATTAACTTGGGTGACTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAAGTTATCACACAGGGTCAGGGACAAACCAAGACATCAGAAGTTCAATTCCCTACGGGTAAAAAGACTTCCTCTGTA
GATATTTACTCTCGTACCTACAAGTCGCCAAGTCAAGCAGATGCGCGTGAAGTAGCTAACTATGGTAAAGACGATCCATA
TACAGCTACAGAAAGCAATTATCAATATCCATCAATGATTGCAAGCTCGGCTGTTGCTGGTTTGATCGGTTTGGTTATTT
CTTATGCTATCGCAATTCCTCTTGGATCTGCTATGGCTCGCCACAAGAATACTTGGATTGACAGCTTCTCGACAGGTGCT
CTAACCTTCTTGCTTGCCCTTCCAACGATTGCCTTGGTTTATATCGTTCGCTTGATTGGATCATCTATTGGTCTGCCTGA
CTCATTCCCTATCTTGGGGGCTGGAGATTGGCGTTCCTACGTCTTGCCAGCAGTCATTCTAGGTCTATTGGGTGCGCCAA
GTACAGCTATCTGGATCCGTCGTTACATGATCGACTTGCAATCTCAGGACTTTGTACGTTTTGCTCGTGCAAAAGGACTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTAAT
CGGGGTTATTGGTGGTGCAACATTGACAGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCAAACAACTCAATGGTAGTTGGTCTTGTCTTCATCTTCACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAC
ATCTGGATGACTATGCTTGACCCGCGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3DYK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.108

100

0.771
  amiC Streptococcus thermophilus LMG 18311

76.506

100

0.765
  amiC Streptococcus thermophilus LMD-9

76.305

100

0.763

Multiple sequence alignment