Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   U8955_RS08680 Genome accession   NZ_OY769914
Coordinates   1727614..1728540 (-) Length   308 a.a.
NCBI ID   WP_000103692.1    Uniprot ID   A0A081R278
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722614..1733540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS08660 (SDENT7746_08690) trkA 1722717..1724066 (+) 1350 WP_038804564.1 Trk system potassium transporter TrkA -
  U8955_RS08665 (SDENT7746_08695) - 1724070..1725509 (+) 1440 WP_038804565.1 TrkH family potassium uptake protein -
  U8955_RS08670 (SDENT7746_08700) amiF 1725598..1726527 (-) 930 WP_038804566.1 ATP-binding cassette domain-containing protein Regulator
  U8955_RS08675 (SDENT7746_08705) amiE 1726538..1727605 (-) 1068 WP_038804567.1 ABC transporter ATP-binding protein Regulator
  U8955_RS08680 (SDENT7746_08710) amiD 1727614..1728540 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  U8955_RS08685 (SDENT7746_08715) amiC 1728540..1730036 (-) 1497 WP_000759921.1 ABC transporter permease Regulator
  U8955_RS08690 (SDENT7746_08720) amiA 1730103..1732082 (-) 1980 WP_038804568.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34667.68 Da        Isoelectric Point: 9.0162

>NTDB_id=1161740 U8955_RS08680 WP_000103692.1 1727614..1728540(-) (amiD) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVFMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1161740 U8955_RS08680 WP_000103692.1 1727614..1728540(-) (amiD) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAGTTTCTAAAGAAAAAATCAACAGTCTTTATGCTAGGAATTTTGGTTGCCATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTCTCTGCTCGT
TTTATCAAGCCCAATGCTGAGCATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGGGC
GCGTAACTCTATCCTCATCTCTGTCATTGCAACTTTTATCAACCTTGTGATTGGGGTTATTGTTGGTGGAATTTGGGGAA
TTTCAAAATCCGTTGACCGCGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATCGTC
TTGACTTACTCGATTGGCGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCTCAAACACTTGGAACACCAACCTTTAAAA
TCATCGTTAAAAACATCATGCCACAATTAGTATCCGTTATTGTTTCTACGATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTACCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTGTTCTGGATTCCGTTGACAACCTTGATCTTGGTATCCCTATCTCTTTTCGTTG
TTGGTCAAAACCTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081R278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818

Multiple sequence alignment