Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   U8955_RS06740 Genome accession   NZ_OY769914
Coordinates   1333228..1333698 (-) Length   156 a.a.
NCBI ID   WP_000609594.1    Uniprot ID   A0A4V0BWD1
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1328228..1338698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS06705 (SDENT7746_06730) - 1328297..1329232 (-) 936 WP_000036036.1 manganese-dependent inorganic pyrophosphatase -
  U8955_RS06710 (SDENT7746_06735) - 1329318..1329602 (-) 285 WP_038805493.1 GIY-YIG nuclease family protein -
  U8955_RS06715 (SDENT7746_06740) - 1329592..1330338 (-) 747 WP_038805494.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  U8955_RS06720 (SDENT7746_06745) - 1330374..1330733 (-) 360 WP_038805495.1 S1 RNA-binding domain-containing protein -
  U8955_RS06725 (SDENT7746_06750) - 1330735..1332135 (-) 1401 WP_038805496.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  U8955_RS06730 (SDENT7746_06755) - 1332217..1332726 (-) 510 WP_038805497.1 GNAT family N-acetyltransferase -
  U8955_RS06735 (SDENT7746_06760) rpsR 1332957..1333196 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  U8955_RS06740 (SDENT7746_06765) ssbA 1333228..1333698 (-) 471 WP_000609594.1 single-stranded DNA-binding protein SsbA Machinery gene
  U8955_RS06745 (SDENT7746_06770) rpsF 1333710..1334000 (-) 291 WP_001151782.1 30S ribosomal protein S6 -
  U8955_RS06750 (SDENT7746_06775) - 1334133..1335341 (-) 1209 WP_038805498.1 MFS transporter -
  U8955_RS06755 (SDENT7746_06780) asnS 1335465..1336808 (-) 1344 WP_000167158.1 asparagine--tRNA ligase -
  U8955_RS06760 (SDENT7746_06785) - 1336961..1338139 (-) 1179 WP_038805499.1 pyridoxal phosphate-dependent aminotransferase -
  U8955_RS06765 (SDENT7746_06790) - 1338149..1338625 (-) 477 WP_038805500.1 DUF5590 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17353.23 Da        Isoelectric Point: 4.9057

>NTDB_id=1161729 U8955_RS06740 WP_000609594.1 1333228..1333698(-) (ssbA) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR
SYDNQQGQRVYVTEVVADNFQMLESRSVREGHTGGAYSAPTASYTAPTQSVPDFSRDENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1161729 U8955_RS06740 WP_000609594.1 1333228..1333698(-) (ssbA) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTCAAGAGTCAAAATGGCGAACGTGAGGCTGATTTCATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACTGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTAACAGAAGTCGTGGCTGACAATTTCCAAATGTTGGAAAGCCGTAG
CGTGCGTGAAGGACATACAGGTGGGGCTTATTCTGCACCAACTGCTAGTTATACAGCACCTACACAATCAGTACCTGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACCAATCCGTTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V0BWD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.07

100

0.596
  ssb Latilactobacillus sakei subsp. sakei 23K

54.706

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssbB/cilA Streptococcus mitis SK321

49.573

75

0.372
  ssbB/cilA Streptococcus mitis NCTC 12261

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae D39

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae R6

49.573

75

0.372

Multiple sequence alignment