Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MARPU_RS14355 Genome accession   NZ_CP007031
Coordinates   3313778..3315040 (+) Length   420 a.a.
NCBI ID   WP_005224056.1    Uniprot ID   W0E244
Organism   Marichromatium purpuratum 984     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3308778..3320040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MARPU_RS14345 (MARPU_14620) - 3311107..3311961 (+) 855 WP_005224058.1 NYN domain-containing protein -
  MARPU_RS14350 (MARPU_14625) pilB 3312056..3313771 (+) 1716 WP_005224057.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MARPU_RS14355 (MARPU_14630) pilC 3313778..3315040 (+) 1263 WP_005224056.1 type II secretion system F family protein Machinery gene
  MARPU_RS14360 (MARPU_14635) pilD 3315098..3315967 (+) 870 WP_005224055.1 A24 family peptidase Machinery gene
  MARPU_RS14365 (MARPU_14640) coaE 3315964..3316590 (+) 627 WP_005224054.1 dephospho-CoA kinase -
  MARPU_RS14370 (MARPU_14645) - 3316666..3316920 (+) 255 WP_005224053.1 hypothetical protein -
  MARPU_RS14375 (MARPU_14650) - 3317093..3318697 (+) 1605 WP_005224052.1 phosphoenolpyruvate carboxykinase -
  MARPU_RS14380 (MARPU_14655) pyrC 3318703..3319743 (+) 1041 WP_005224051.1 dihydroorotase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45775.07 Da        Isoelectric Point: 10.1297

>NTDB_id=116100 MARPU_RS14355 WP_005224056.1 3313778..3315040(+) (pilC) [Marichromatium purpuratum 984]
MALAAKQKPKASQNKTKDKDKATVFLWEGVDRKGSRIKGESRAATMNLVRAELRRQGVNPTKVRKKPQPLLGTRKKKITT
ADIAVFTRQLATMMAAGVPLVQAFDIVGRGHDNPSMQDMILAIKQDIESGTAMALALGKYPLYFDDLVCNLVAAGEQAGV
LDVLLDKIATYKEKTESIKGKIKKAMFYPAAVIAVAVIVTVVILLFVIPQFKDLFSSFGADLPAFTLMVINLSDLLRQWW
WAVFLGLGALGYGFTALYKRSRGLREGIDRMVLRIPVIGSILNKAALARFARTLSTMFAAGVPLVDALESVSGATGNIVY
QDAVLKMREEVATGQSLQLAMRQRDLFPHMVIQMTSIGEESGALDTMLGKVADFYEEQVDNAVDSLSSLLEPMIMVIIGG
LVGSLVVAMYLPIFKLASVV

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=116100 MARPU_RS14355 WP_005224056.1 3313778..3315040(+) (pilC) [Marichromatium purpuratum 984]
ATGGCGCTGGCAGCGAAACAGAAACCGAAGGCCTCCCAGAACAAGACCAAGGACAAGGACAAGGCCACCGTCTTCCTCTG
GGAAGGGGTCGACCGCAAGGGCTCCCGCATCAAGGGCGAGAGCCGCGCGGCCACCATGAACCTGGTCCGCGCCGAACTGC
GTCGCCAGGGCGTCAATCCGACCAAGGTGCGCAAGAAACCCCAGCCGCTGCTCGGCACCCGCAAGAAGAAGATCACCACC
GCCGACATCGCCGTGTTCACCCGCCAGCTCGCCACCATGATGGCCGCGGGCGTACCCCTGGTGCAGGCCTTCGACATCGT
CGGGCGTGGTCACGACAACCCCTCGATGCAGGACATGATCCTGGCGATCAAGCAGGACATCGAGAGCGGCACCGCGATGG
CCCTGGCGCTCGGCAAGTATCCGCTCTATTTCGATGACCTGGTGTGCAACCTGGTCGCCGCCGGCGAGCAGGCCGGTGTG
CTCGACGTGCTGCTCGACAAGATCGCCACCTACAAGGAGAAGACCGAGTCGATCAAGGGCAAGATCAAGAAGGCGATGTT
CTATCCCGCGGCGGTGATCGCCGTGGCGGTGATCGTCACCGTGGTGATCCTGCTGTTCGTCATCCCCCAGTTCAAGGACC
TGTTCTCGAGCTTCGGCGCCGACCTGCCGGCCTTCACCCTGATGGTGATCAACCTCTCCGACCTGCTGCGCCAGTGGTGG
TGGGCGGTGTTCCTCGGACTCGGCGCCCTCGGCTACGGCTTCACCGCACTCTACAAGCGCAGCCGCGGATTGCGCGAGGG
GATCGACCGGATGGTGCTACGCATCCCGGTGATCGGCTCGATCCTCAACAAGGCCGCACTGGCACGCTTCGCCCGCACCC
TCTCGACCATGTTCGCCGCCGGTGTGCCGCTGGTCGACGCGCTCGAGTCGGTCTCCGGGGCCACCGGCAACATCGTCTAC
CAGGACGCGGTGCTGAAGATGCGCGAGGAGGTCGCCACGGGTCAGTCGCTGCAGCTGGCGATGCGCCAGCGCGACCTCTT
CCCCCACATGGTGATCCAGATGACCTCGATCGGCGAGGAGTCGGGCGCGCTCGACACCATGCTCGGCAAGGTCGCCGACT
TCTACGAGGAGCAGGTCGACAACGCCGTCGACAGCCTCAGCAGCCTGCTCGAACCCATGATCATGGTGATCATCGGCGGC
CTGGTCGGCAGCCTGGTGGTGGCCATGTACCTGCCGATCTTCAAGCTCGCCTCCGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(86-209)

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0E244

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.75

95.238

0.55
  pilC Legionella pneumophila strain ERS1305867

56.931

96.19

0.548
  pilC Acinetobacter baumannii D1279779

56.423

94.524

0.533
  pilC Acinetobacter baylyi ADP1

56.281

94.762

0.533
  pilG Neisseria gonorrhoeae MS11

47.132

95.476

0.45
  pilG Neisseria meningitidis 44/76-A

46.883

95.476

0.448
  pilC Vibrio campbellii strain DS40M4

41.667

94.286

0.393
  pilC Vibrio cholerae strain A1552

40.657

94.286

0.383

Multiple sequence alignment