Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | R2K28_RS02965 | Genome accession | NZ_OY734020 |
| Coordinates | 649804..651033 (-) | Length | 409 a.a. |
| NCBI ID | WP_316367907.1 | Uniprot ID | - |
| Organism | Candidatus Thiodiazotropha sp. CDECU1 isolate 46184 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 644804..656033
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R2K28_RS02950 | clpB | 645467..648061 (+) | 2595 | WP_316367905.1 | ATP-dependent chaperone ClpB | - |
| R2K28_RS02955 | coaE | 648296..648892 (-) | 597 | WP_316367906.1 | dephospho-CoA kinase | - |
| R2K28_RS02960 | pilD | 648892..649758 (-) | 867 | WP_316369671.1 | A24 family peptidase | Machinery gene |
| R2K28_RS02965 | pilC | 649804..651033 (-) | 1230 | WP_316367907.1 | type II secretion system F family protein | Machinery gene |
| R2K28_RS02970 | pilB | 651037..652752 (-) | 1716 | WP_316367908.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| R2K28_RS02975 | - | 653239..653694 (-) | 456 | WP_316367909.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| R2K28_RS02980 | pilR | 654294..655649 (-) | 1356 | WP_316367910.1 | sigma-54 dependent transcriptional regulator | Regulator |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 45035.20 Da Isoelectric Point: 10.1629
>NTDB_id=1160747 R2K28_RS02965 WP_316367907.1 649804..651033(-) (pilC) [Candidatus Thiodiazotropha sp. CDECU1 isolate 46184]
MAPPRKKAKVKSHLYKWEGTDKKGARLSGESRGTDVNMVKADLRRQGVTPLKVRKKPTNLVLTKQKITSADVTVFSRQLA
TMMAAGVPMVQAFDIVGRGHDNPSMQELILTIKADVEGGTALADALKKHPLHFEDLFVNLVRAGEHAGVLESLLHKIATY
KEKTESIKGKIKKAMFYPAAVIIAAILVTAILLIFVIPQFESLFSSFGADLPALTRFVVNLSELVRDWWWAMLGGIIAFI
YTFIYIWKRSRKFRHNVDRILLKVPVVGMVLDKSAIARFSRTLSTMSAAGVPLVEALDSVAGATGNVVYSDAVLRMREDV
ATGQSLQLAMKQRNLFPNMVVQMVAIGEESGALDDMLNKVADFYEEQVDNAVDAMSSLMEPIIMVILGVLIGTLVVAMYL
PIFKMASVV
MAPPRKKAKVKSHLYKWEGTDKKGARLSGESRGTDVNMVKADLRRQGVTPLKVRKKPTNLVLTKQKITSADVTVFSRQLA
TMMAAGVPMVQAFDIVGRGHDNPSMQELILTIKADVEGGTALADALKKHPLHFEDLFVNLVRAGEHAGVLESLLHKIATY
KEKTESIKGKIKKAMFYPAAVIIAAILVTAILLIFVIPQFESLFSSFGADLPALTRFVVNLSELVRDWWWAMLGGIIAFI
YTFIYIWKRSRKFRHNVDRILLKVPVVGMVLDKSAIARFSRTLSTMSAAGVPLVEALDSVAGATGNVVYSDAVLRMREDV
ATGQSLQLAMKQRNLFPNMVVQMVAIGEESGALDDMLNKVADFYEEQVDNAVDAMSSLMEPIIMVILGVLIGTLVVAMYL
PIFKMASVV
Nucleotide
Download Length: 1230 bp
>NTDB_id=1160747 R2K28_RS02965 WP_316367907.1 649804..651033(-) (pilC) [Candidatus Thiodiazotropha sp. CDECU1 isolate 46184]
ATGGCACCTCCAAGAAAGAAAGCAAAGGTAAAATCCCACCTCTACAAATGGGAAGGCACGGACAAGAAGGGCGCTCGCCT
GAGTGGCGAGAGTCGAGGCACGGATGTCAATATGGTCAAGGCCGATCTGCGGCGTCAAGGGGTAACCCCCCTCAAGGTAA
GAAAAAAGCCTACCAATTTAGTACTCACAAAACAGAAGATCACCAGTGCTGATGTCACTGTGTTCAGCCGCCAGCTGGCC
ACCATGATGGCGGCAGGCGTACCCATGGTACAGGCCTTCGACATTGTCGGACGGGGACACGACAACCCCTCGATGCAGGA
ACTGATCCTCACCATCAAGGCCGATGTGGAAGGAGGTACGGCCCTGGCCGATGCTTTGAAGAAACATCCACTCCATTTCG
AGGATCTTTTTGTCAACCTGGTCCGTGCCGGTGAACATGCTGGTGTCCTTGAGTCCCTGCTACATAAGATCGCCACCTAT
AAAGAGAAGACGGAGTCGATCAAAGGCAAGATCAAGAAGGCCATGTTCTACCCGGCTGCCGTGATCATCGCCGCCATATT
GGTCACTGCTATCCTGCTGATTTTTGTCATACCCCAATTTGAATCACTTTTCTCAAGTTTTGGCGCCGATCTTCCCGCCT
TGACCCGTTTTGTCGTCAACCTTTCAGAACTGGTACGTGATTGGTGGTGGGCTATGCTGGGTGGAATAATCGCCTTTATC
TACACGTTCATATATATATGGAAAAGATCACGAAAATTCAGGCATAATGTCGATCGGATCCTGCTGAAAGTACCTGTTGT
CGGCATGGTGCTGGATAAATCCGCCATTGCCCGCTTCTCCCGGACCCTCTCTACCATGTCAGCCGCGGGTGTGCCCCTGG
TGGAAGCCCTCGATTCCGTTGCTGGTGCGACAGGCAACGTAGTCTATAGTGATGCCGTACTGCGCATGCGTGAGGATGTC
GCAACCGGTCAATCCCTGCAACTCGCTATGAAACAACGCAACCTGTTTCCCAACATGGTTGTACAGATGGTCGCCATCGG
CGAAGAATCTGGCGCCCTCGATGATATGCTGAACAAGGTTGCGGATTTCTATGAAGAGCAGGTGGATAATGCCGTTGATG
CCATGAGTAGTTTGATGGAGCCCATCATTATGGTCATATTAGGTGTTCTGATCGGCACATTGGTGGTCGCCATGTATCTG
CCCATATTCAAGATGGCCTCTGTCGTCTGA
ATGGCACCTCCAAGAAAGAAAGCAAAGGTAAAATCCCACCTCTACAAATGGGAAGGCACGGACAAGAAGGGCGCTCGCCT
GAGTGGCGAGAGTCGAGGCACGGATGTCAATATGGTCAAGGCCGATCTGCGGCGTCAAGGGGTAACCCCCCTCAAGGTAA
GAAAAAAGCCTACCAATTTAGTACTCACAAAACAGAAGATCACCAGTGCTGATGTCACTGTGTTCAGCCGCCAGCTGGCC
ACCATGATGGCGGCAGGCGTACCCATGGTACAGGCCTTCGACATTGTCGGACGGGGACACGACAACCCCTCGATGCAGGA
ACTGATCCTCACCATCAAGGCCGATGTGGAAGGAGGTACGGCCCTGGCCGATGCTTTGAAGAAACATCCACTCCATTTCG
AGGATCTTTTTGTCAACCTGGTCCGTGCCGGTGAACATGCTGGTGTCCTTGAGTCCCTGCTACATAAGATCGCCACCTAT
AAAGAGAAGACGGAGTCGATCAAAGGCAAGATCAAGAAGGCCATGTTCTACCCGGCTGCCGTGATCATCGCCGCCATATT
GGTCACTGCTATCCTGCTGATTTTTGTCATACCCCAATTTGAATCACTTTTCTCAAGTTTTGGCGCCGATCTTCCCGCCT
TGACCCGTTTTGTCGTCAACCTTTCAGAACTGGTACGTGATTGGTGGTGGGCTATGCTGGGTGGAATAATCGCCTTTATC
TACACGTTCATATATATATGGAAAAGATCACGAAAATTCAGGCATAATGTCGATCGGATCCTGCTGAAAGTACCTGTTGT
CGGCATGGTGCTGGATAAATCCGCCATTGCCCGCTTCTCCCGGACCCTCTCTACCATGTCAGCCGCGGGTGTGCCCCTGG
TGGAAGCCCTCGATTCCGTTGCTGGTGCGACAGGCAACGTAGTCTATAGTGATGCCGTACTGCGCATGCGTGAGGATGTC
GCAACCGGTCAATCCCTGCAACTCGCTATGAAACAACGCAACCTGTTTCCCAACATGGTTGTACAGATGGTCGCCATCGG
CGAAGAATCTGGCGCCCTCGATGATATGCTGAACAAGGTTGCGGATTTCTATGAAGAGCAGGTGGATAATGCCGTTGATG
CCATGAGTAGTTTGATGGAGCCCATCATTATGGTCATATTAGGTGTTCTGATCGGCACATTGGTGGTCGCCATGTATCTG
CCCATATTCAAGATGGCCTCTGTCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
58.081 |
96.822 |
0.562 |
| pilC | Acinetobacter baumannii D1279779 |
55.919 |
97.066 |
0.543 |
| pilC | Pseudomonas stutzeri DSM 10701 |
55.25 |
97.8 |
0.54 |
| pilC | Acinetobacter baylyi ADP1 |
53.769 |
97.311 |
0.523 |
| pilG | Neisseria meningitidis 44/76-A |
46.75 |
97.8 |
0.457 |
| pilG | Neisseria gonorrhoeae MS11 |
46.75 |
97.8 |
0.457 |
| pilC | Vibrio cholerae strain A1552 |
42.065 |
97.066 |
0.408 |
| pilC | Vibrio campbellii strain DS40M4 |
39.899 |
96.822 |
0.386 |
| pilC | Thermus thermophilus HB27 |
38 |
97.8 |
0.372 |