Detailed information NTG1160749

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: R2K28_RS02980
• Genome accession: NZ_OY734020
• Coordinates: 654294..655649 (-)
• Length: 451 a.a.
• NCBI ID: WP_316367910.1
• Uniprot ID: -
• Organism: Candidatus Thiodiazotropha sp. CDECU1 isolate 46184
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 649294..660649

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R2K28_RS02965	pilC	649804..651033 (-)	1230	WP_316367907.1	type II secretion system F family protein	Machinery gene
R2K28_RS02970	pilB	651037..652752 (-)	1716	WP_316367908.1	type IV-A pilus assembly ATPase PilB	Machinery gene
R2K28_RS02975	-	653239..653694 (-)	456	WP_316367909.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
R2K28_RS02980	pilR	654294..655649 (-)	1356	WP_316367910.1	sigma-54 dependent transcriptional regulator	Regulator
R2K28_RS02985	-	655646..657292 (-)	1647	WP_316367911.1	ATP-binding protein	-
R2K28_RS02990	-	657298..657534 (-)	237	WP_116445750.1	PP0621 family protein	-
R2K28_RS02995	-	657835..659448 (+)	1614	WP_316367912.1	NAD+ synthase	-
R2K28_RS03000	-	659558..659896 (+)	339	WP_116445752.1	P-II family nitrogen regulator	-

Sequence

Protein

• Length: 451 a.a.
• Molecular weight: 49874.21 Da
• Isoelectric Point: 6.3963

>NTDB_id=1160749 R2K28_RS02980 WP_316367910.1 654294..655649(-) (pilR) [Candidatus Thiodiazotropha sp. CDECU1 isolate 46184]
MTQPTALIVDDEPDICELLEITLIRMGIDAHSVFDLASARKILTEQAFDLCLSDMRLPDGNGIDLVRHINQTYPQLPVAM
ITAHGNMESAIEALKAGAFDFVSKPVDLEMLRKLVQQAISLGKQTAQPASPDKTPGGEHSPMLGNSPPMKRVRGLISKLA
RSQAPVYISGESGTGKELAARQIHQLGPRAEHPFVAVNCGAIPHELMESELFGHKKGSFTGASSDHQGLFLSADGGTLFL
DEIADLPLHMQVKLLRAIQEKQVRSVGSQEEIPMDVRIISATHRDLAELVENGEFRQDLFYRINVIELPLPPLRERSEDI
PLLAQHFLTRMARDSGNKKSKLSSSALKKLKAYSFPGNIRELENILERSVTLLEGSELLAEDLHLPENHQAKASQASVSS
DRPLGDKMEQVERDAIVKALEETRWNRTAAAKKLGMTLRSLRYRLEKFGIE

Nucleotide

• Length: 1356 bp

>NTDB_id=1160749 R2K28_RS02980 WP_316367910.1 654294..655649(-) (pilR) [Candidatus Thiodiazotropha sp. CDECU1 isolate 46184]
ATGACCCAGCCGACAGCCCTGATCGTTGACGATGAGCCGGATATCTGTGAATTGTTGGAAATCACCCTGATTCGCATGGG
GATCGACGCTCACTCTGTGTTTGACCTGGCAAGCGCGCGAAAAATACTCACCGAGCAGGCATTCGATCTCTGCCTATCCG
ACATGCGACTGCCTGACGGCAACGGCATCGACCTGGTCAGGCATATCAACCAGACCTATCCGCAACTGCCCGTGGCCATG
ATAACCGCCCACGGGAACATGGAGTCCGCCATCGAGGCCCTGAAGGCAGGGGCATTCGACTTTGTATCCAAGCCTGTCGA
CCTGGAAATGCTGCGTAAGCTGGTGCAGCAGGCGATCAGTCTGGGCAAGCAGACGGCGCAGCCGGCATCGCCCGATAAAA
CACCTGGTGGCGAACACTCCCCGATGCTGGGCAATTCACCGCCCATGAAACGGGTTCGGGGGCTGATCAGCAAACTGGCC
CGCAGCCAGGCCCCGGTCTACATCAGCGGTGAATCGGGTACCGGAAAGGAGTTGGCTGCACGACAGATTCACCAACTGGG
TCCCCGAGCCGAGCACCCCTTCGTGGCGGTCAACTGTGGCGCCATTCCCCATGAACTCATGGAGAGTGAGCTCTTCGGGC
ACAAAAAGGGGAGCTTCACCGGTGCCAGCAGTGATCACCAGGGACTGTTTCTCAGCGCGGATGGGGGCACCCTGTTCCTG
GATGAGATCGCCGATCTGCCCCTGCACATGCAGGTCAAGCTGTTGCGCGCGATCCAGGAAAAACAGGTTCGATCCGTGGG
CAGCCAGGAGGAGATCCCCATGGATGTGCGTATCATCAGCGCCACCCACAGGGACCTTGCCGAACTGGTGGAAAACGGCG
AATTCAGGCAGGACCTCTTCTACCGTATCAACGTAATTGAATTGCCCCTGCCGCCGTTGAGGGAGAGAAGTGAAGACATC
CCCCTGCTGGCCCAGCACTTCCTCACCCGCATGGCCCGGGATAGCGGGAACAAAAAGTCAAAGCTCTCCTCATCCGCCTT
GAAGAAACTCAAGGCCTACAGCTTCCCGGGCAATATCCGCGAGCTGGAAAACATACTCGAACGCTCCGTCACCCTGCTCG
AGGGATCGGAACTTCTCGCCGAAGATCTGCATCTGCCCGAAAACCACCAGGCAAAGGCCAGCCAAGCCAGCGTATCCTCC
GACCGACCCTTGGGTGACAAGATGGAGCAGGTGGAACGGGATGCCATCGTAAAGGCCCTTGAAGAGACCCGCTGGAACCG
CACAGCGGCGGCAAAAAAGCTCGGCATGACCCTCCGATCCCTTCGCTACCGACTGGAAAAATTCGGTATCGAATAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (143-308)

• Bacterial regulatory protein, Fis family (HTH_8) (408-448)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.504	100	0.616
pilR	Acinetobacter baumannii strain A118	51.606	100	0.534
luxO	Vibrio cholerae strain A1552	36.807	100	0.368