Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QOT06_RS02150 Genome accession   NZ_OX461117
Coordinates   511206..512477 (-) Length   423 a.a.
NCBI ID   WP_283627630.1    Uniprot ID   -
Organism   Shewanella baltica strain SF1039 isolate SF1039     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 506206..517477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOT06_RS02120 - 507021..507557 (-) 537 WP_283627622.1 thioredoxin family protein -
  QOT06_RS02125 mutT 508114..508506 (-) 393 WP_259561568.1 8-oxo-dGTP diphosphatase MutT -
  QOT06_RS02130 yacG 508583..508792 (-) 210 WP_006083355.1 DNA gyrase inhibitor YacG -
  QOT06_RS02135 zapD 508866..509600 (-) 735 WP_283627626.1 cell division protein ZapD -
  QOT06_RS02140 coaE 509593..510210 (-) 618 WP_283627627.1 dephospho-CoA kinase -
  QOT06_RS02145 pilD 510250..511164 (-) 915 WP_283627628.1 A24 family peptidase Machinery gene
  QOT06_RS02150 pilC 511206..512477 (-) 1272 WP_283627630.1 type II secretion system F family protein Machinery gene
  QOT06_RS02155 pilB 512611..514323 (-) 1713 WP_283627632.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QOT06_RS02160 - 514770..516131 (+) 1362 WP_283627634.1 O-antigen ligase family protein -
  QOT06_RS02165 - 516393..516806 (-) 414 Protein_420 IS4 family transposase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46120.25 Da        Isoelectric Point: 10.1188

>NTDB_id=1159813 QOT06_RS02150 WP_283627630.1 511206..512477(-) (pilC) [Shewanella baltica strain SF1039 isolate SF1039]
MATATTVRKSRTKKNEQKSQPKIYTFEWKGLNRDGKKTAGELRGASAAEIRSQLKSQGVNPKSVRKQSSPLFKLGDASIT
PMDIAMMTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLANILSEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSG
SLDLVFDRVATYREKTEALKSKIKKAMFYPAAVVIVAILVTTLLLLFVVPQFEDIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLAAIVGGVFLFVRAHRNSQILRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGNIVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1159813 QOT06_RS02150 WP_283627630.1 511206..512477(-) (pilC) [Shewanella baltica strain SF1039 isolate SF1039]
ATGGCTACGGCAACGACAGTAAGAAAGTCTCGTACCAAGAAAAACGAGCAAAAGAGCCAACCAAAAATCTATACCTTTGA
ATGGAAAGGCTTAAATCGCGACGGCAAGAAGACTGCGGGAGAACTCAGAGGTGCTTCTGCCGCCGAAATCCGTAGTCAAT
TAAAATCCCAAGGAGTCAACCCTAAGAGCGTTCGTAAGCAGTCCTCTCCGCTTTTTAAGCTAGGTGATGCCAGCATTACC
CCAATGGATATTGCTATGATGACTCGCCAAATCGCGACTATGTTGGCGGCGGGCGTACCTTTAGTCACCACAATTGAACT
ACTCGGCCGCGGCCACGAAAAAGCTAAGATGCGTGAATTACTTGCAAATATTCTCAGCGAAATTCAATCAGGGATTCCCT
TATCCGATGCGATGCGTCCCCATAGACGCTACTTCGATGAACTTTATGTCGACCTAGTCGCTGCAGGTGAACATTCTGGT
TCACTAGACTTGGTCTTCGATCGTGTTGCTACCTACAGAGAAAAAACGGAAGCACTCAAATCAAAAATTAAGAAGGCCAT
GTTCTATCCAGCCGCTGTTGTCATCGTCGCGATATTAGTAACAACCTTATTATTACTCTTTGTCGTCCCTCAATTCGAAG
ATATATTTAAAGGCTTTGGTGCTGAACTGCCCGCCTTTACCCAATTAGTGCTTCACATTTCCCGCGGCTTACAATCCTCT
TGGTATATCTTTTTAGCTGCCATTGTAGGCGGAGTATTTTTGTTCGTTCGAGCCCACAGAAACTCCCAAATTTTACGTGA
TAGAGTCGATGAAGCTGTACTTAAAATCCCAGCCATTGGGCCGATTTTACACAAAGGAGCCATGGCTCGATTCGCCCGGA
CTTTAGCTACTACCTTCGCCGCGGGTGTGCCGCTGATTGATGGTCTAGAATCCGCTGCAGGCGCATCGGGTAACGCGGTA
TACCGCAAAGCTATTTTAAAAATTCGTCAAGAAGTCATGGCGGGGATGCAGATGAATGTGGCGATGCAGACGACAGGGCT
TTTCCCCGACATGTTAGTGCAAATGGTGATGATAGGCGAAGAATCCGGCTCACTGGATAACATGCTCAATAAAGTCTCAA
CCATTTACGAAATGCAAGTAGATGATGCGGTTGATGGCTTATCAAGCCTGATAGAACCGATTATGATGGTCGTAATCGGT
ACCGTGGTCGGCGGGTTAATCGTTGCTATGTATCTACCTATTTTCCAAATGGGTAATATTGTAGGCGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

93.617

0.52
  pilC Legionella pneumophila strain ERS1305867

49.257

95.508

0.47
  pilC Acinetobacter baumannii D1279779

49.246

94.09

0.463
  pilC Acinetobacter baylyi ADP1

48.615

93.853

0.456
  pilC Vibrio cholerae strain A1552

47.368

94.326

0.447
  pilC Vibrio campbellii strain DS40M4

44.01

96.69

0.426
  pilG Neisseria meningitidis 44/76-A

41.542

95.035

0.395
  pilG Neisseria gonorrhoeae MS11

41.542

95.035

0.395

Multiple sequence alignment