Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QOT06_RS02145 Genome accession   NZ_OX461117
Coordinates   510250..511164 (-) Length   304 a.a.
NCBI ID   WP_283627628.1    Uniprot ID   -
Organism   Shewanella baltica strain SF1039 isolate SF1039     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 505250..516164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOT06_RS02115 - 506028..506954 (+) 927 WP_283627620.1 exopolyphosphatase -
  QOT06_RS02120 - 507021..507557 (-) 537 WP_283627622.1 thioredoxin family protein -
  QOT06_RS02125 mutT 508114..508506 (-) 393 WP_259561568.1 8-oxo-dGTP diphosphatase MutT -
  QOT06_RS02130 yacG 508583..508792 (-) 210 WP_006083355.1 DNA gyrase inhibitor YacG -
  QOT06_RS02135 zapD 508866..509600 (-) 735 WP_283627626.1 cell division protein ZapD -
  QOT06_RS02140 coaE 509593..510210 (-) 618 WP_283627627.1 dephospho-CoA kinase -
  QOT06_RS02145 pilD 510250..511164 (-) 915 WP_283627628.1 A24 family peptidase Machinery gene
  QOT06_RS02150 pilC 511206..512477 (-) 1272 WP_283627630.1 type II secretion system F family protein Machinery gene
  QOT06_RS02155 pilB 512611..514323 (-) 1713 WP_283627632.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QOT06_RS02160 - 514770..516131 (+) 1362 WP_283627634.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 33916.36 Da        Isoelectric Point: 7.3854

>NTDB_id=1159812 QOT06_RS02145 WP_283627628.1 510250..511164(-) (pilD) [Shewanella baltica strain SF1039 isolate SF1039]
MSEFISILGQHPYLFTALSFIFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHEDIVKKIGIDQLNKPIDAFPEKY
NLVVPGSACPKCKTAIKPWHNLPLLGWLMLKGKCAACHAPISARYPIIEFVTGLLIATLAWHFGPSWQFIFASILTFVLV
ALTGIDLDEMLLPDQMTLPLLWLGLIINLDHTFASPTDAIIGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAVFGAW
LGWQMLPLVILLSSLVGAVVGITMIVSKRLKQGNPIPFGPYIAAAGWIALLFGQQIVDWYLSTL

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1159812 QOT06_RS02145 WP_283627628.1 510250..511164(-) (pilD) [Shewanella baltica strain SF1039 isolate SF1039]
ATGTCAGAATTCATCTCCATTTTGGGCCAGCACCCTTATCTCTTTACTGCTCTAAGCTTTATTTTTGCTGCTACCATTGG
TAGTTTTTTAAACGTGGTGATCCACAGATTTCCTGTGATGATGAAACGGGAGTGGCAGCAAGAATGCAATCAGTATTTGC
AGGAATACCACGAAGACATAGTCAAAAAAATAGGGATAGACCAACTCAATAAACCTATTGATGCCTTTCCTGAAAAGTAC
AATCTTGTTGTGCCTGGTTCAGCCTGCCCAAAATGTAAAACGGCGATTAAACCTTGGCATAATTTACCCCTATTAGGCTG
GTTAATGCTCAAGGGAAAATGCGCCGCCTGTCACGCGCCTATTTCTGCCCGCTACCCCATTATTGAATTCGTCACAGGGC
TACTTATCGCGACTTTAGCTTGGCATTTTGGTCCAAGCTGGCAGTTTATTTTTGCGAGCATACTCACTTTTGTGCTTGTA
GCACTGACGGGTATCGATCTTGATGAGATGTTACTCCCCGACCAAATGACGTTGCCGTTACTTTGGCTAGGCTTGATAAT
CAATTTAGATCATACCTTTGCGAGCCCAACCGATGCGATTATCGGTGCGGCGGCAGGCTATTTGAGTCTATGGTCCATTT
TCTGGTTGTTTAAAATCCTCACCGGCAAGGAAGGCATGGGCTATGGCGACTTTAAATTACTCGCCGTGTTCGGTGCTTGG
CTTGGCTGGCAAATGCTGCCGTTGGTGATTTTACTTTCGTCCCTCGTTGGCGCAGTCGTTGGCATCACTATGATTGTCAG
TAAACGCCTGAAACAAGGGAATCCAATCCCATTTGGCCCCTATATTGCCGCAGCTGGCTGGATAGCCTTGCTATTTGGAC
AACAGATTGTCGATTGGTATCTATCAACACTGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(154-262)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

51.351

97.368

0.5
  pilD Vibrio campbellii strain DS40M4

47.841

99.013

0.474
  pilD Acinetobacter nosocomialis M2

49.306

94.737

0.467
  pilD Acinetobacter baumannii D1279779

48.611

94.737

0.461
  pilD Neisseria gonorrhoeae MS11

44.637

95.066

0.424

Multiple sequence alignment