Detailed information
Bioinformatically predicted
Overview
| Name | comYA | Type | Machinery gene |
| Locus tag | QOR57_RS01105 | Genome accession | NZ_OX461088 |
| Coordinates | 188192..189163 (+) | Length | 323 a.a. |
| NCBI ID | WP_000250799.1 | Uniprot ID | - |
| Organism | Streptococcus agalactiae isolate MRI Z2-338 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 183192..194163
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QOR57_RS01095 | rpoC | 183891..187541 (+) | 3651 | WP_000228729.1 | DNA-directed RNA polymerase subunit beta' | - |
| QOR57_RS01100 | - | 187655..188020 (+) | 366 | WP_000285373.1 | DUF1033 family protein | - |
| QOR57_RS01105 | comYA | 188192..189163 (+) | 972 | WP_000250799.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| QOR57_RS01110 | comYB | 189057..190100 (+) | 1044 | WP_228322108.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| QOR57_RS01115 | comGC/cglC | 190097..190426 (+) | 330 | WP_000793380.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| QOR57_RS01120 | comYD | 190401..190814 (+) | 414 | WP_017646959.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| QOR57_RS01125 | comGE | 190786..191085 (+) | 300 | WP_025195478.1 | competence type IV pilus minor pilin ComGE | - |
| QOR57_RS01130 | comGF | 191039..191500 (+) | 462 | WP_001874060.1 | competence type IV pilus minor pilin ComGF | - |
| QOR57_RS01135 | comGG | 191478..191849 (+) | 372 | WP_000601103.1 | competence type IV pilus minor pilin ComGG | - |
| QOR57_RS01140 | comYH | 191964..192938 (+) | 975 | WP_001008568.1 | class I SAM-dependent methyltransferase | Machinery gene |
| QOR57_RS01145 | - | 192970..194163 (+) | 1194 | WP_000047537.1 | acetate kinase | - |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 36832.29 Da Isoelectric Point: 6.9167
>NTDB_id=1159636 QOR57_RS01105 WP_000250799.1 188192..189163(+) (comYA) [Streptococcus agalactiae isolate MRI Z2-338]
MVQSLAKHVIHQAVEVNAQDIYIIPKGDCYELYMRIDDERRFIDVFEFNRMASLISHFKFVAGMNVGEKRRSQLGSCDYE
LSEGRLVSLRLSSVGDYRGQESLVIRILYSGHQDLKYWFDNIKQMKEVLGTRGLYLFSGPVGSGKTTLMYQFASEVFKNK
QIITIEDPVEIKNDKMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSIPGV
YDRLIELGVNYQELENSLKLIAYQRLIGGGSLIDFETGNFKKHSSDKWNRQVDILAEEGHISKKQAQVEKIIPQETTESS
PTF
MVQSLAKHVIHQAVEVNAQDIYIIPKGDCYELYMRIDDERRFIDVFEFNRMASLISHFKFVAGMNVGEKRRSQLGSCDYE
LSEGRLVSLRLSSVGDYRGQESLVIRILYSGHQDLKYWFDNIKQMKEVLGTRGLYLFSGPVGSGKTTLMYQFASEVFKNK
QIITIEDPVEIKNDKMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSIPGV
YDRLIELGVNYQELENSLKLIAYQRLIGGGSLIDFETGNFKKHSSDKWNRQVDILAEEGHISKKQAQVEKIIPQETTESS
PTF
Nucleotide
Download Length: 972 bp
>NTDB_id=1159636 QOR57_RS01105 WP_000250799.1 188192..189163(+) (comYA) [Streptococcus agalactiae isolate MRI Z2-338]
ATGGTTCAATCATTAGCAAAGCACGTCATTCATCAGGCAGTAGAAGTAAATGCTCAAGATATTTATATCATTCCCAAAGG
TGATTGTTATGAACTCTATATGCGTATTGATGATGAAAGGCGGTTTATTGATGTTTTTGAGTTTAATAGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGCATGAACGTTGGAGAAAAAAGACGAAGTCAATTAGGTTCTTGTGACTATGAA
CTGTCAGAGGGAAGACTGGTTTCATTACGACTATCGAGTGTGGGAGATTATCGTGGTCAAGAATCTTTAGTTATTCGTAT
TTTGTATTCAGGTCATCAGGACTTAAAATATTGGTTTGATAATATAAAGCAAATGAAGGAAGTACTGGGTACAAGAGGGC
TATATCTTTTTTCCGGCCCTGTGGGGAGTGGTAAAACAACTCTCATGTATCAATTCGCTTCAGAAGTATTTAAAAATAAG
CAAATTATCACGATTGAAGATCCGGTAGAAATCAAGAATGACAAGATGTTACAACTCCAATTGAATGAGGATATTGGAAT
GACTTATGATGCTTTAATCAAACTGTCTTTACGGCATCGTCCAGATATTTTAATTATCGGAGAGATTAGAGATCAAGCGA
CGGCTCGTGCTGTTATTCGTGCAAGTTTAACGGGAGTGATGGTTTTTTCTACTATTCATGCTAAAAGTATTCCCGGAGTC
TATGATAGGCTTATAGAATTAGGGGTTAACTATCAAGAGTTAGAAAATAGTCTAAAATTAATAGCATATCAACGTTTAAT
TGGAGGAGGAAGCCTAATTGACTTTGAGACAGGTAACTTTAAAAAACACTCATCAGACAAGTGGAATAGACAAGTGGATA
TCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAAACAACGGAAAGTAGT
CCAACTTTTTAA
ATGGTTCAATCATTAGCAAAGCACGTCATTCATCAGGCAGTAGAAGTAAATGCTCAAGATATTTATATCATTCCCAAAGG
TGATTGTTATGAACTCTATATGCGTATTGATGATGAAAGGCGGTTTATTGATGTTTTTGAGTTTAATAGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGCATGAACGTTGGAGAAAAAAGACGAAGTCAATTAGGTTCTTGTGACTATGAA
CTGTCAGAGGGAAGACTGGTTTCATTACGACTATCGAGTGTGGGAGATTATCGTGGTCAAGAATCTTTAGTTATTCGTAT
TTTGTATTCAGGTCATCAGGACTTAAAATATTGGTTTGATAATATAAAGCAAATGAAGGAAGTACTGGGTACAAGAGGGC
TATATCTTTTTTCCGGCCCTGTGGGGAGTGGTAAAACAACTCTCATGTATCAATTCGCTTCAGAAGTATTTAAAAATAAG
CAAATTATCACGATTGAAGATCCGGTAGAAATCAAGAATGACAAGATGTTACAACTCCAATTGAATGAGGATATTGGAAT
GACTTATGATGCTTTAATCAAACTGTCTTTACGGCATCGTCCAGATATTTTAATTATCGGAGAGATTAGAGATCAAGCGA
CGGCTCGTGCTGTTATTCGTGCAAGTTTAACGGGAGTGATGGTTTTTTCTACTATTCATGCTAAAAGTATTCCCGGAGTC
TATGATAGGCTTATAGAATTAGGGGTTAACTATCAAGAGTTAGAAAATAGTCTAAAATTAATAGCATATCAACGTTTAAT
TGGAGGAGGAAGCCTAATTGACTTTGAGACAGGTAACTTTAAAAAACACTCATCAGACAAGTGGAATAGACAAGTGGATA
TCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAAACAACGGAAAGTAGT
CCAACTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYA | Streptococcus mutans UA159 |
68.489 |
96.285 |
0.659 |
| comYA | Streptococcus mutans UA140 |
68.489 |
96.285 |
0.659 |
| comYA | Streptococcus gordonii str. Challis substr. CH1 |
63.323 |
98.762 |
0.625 |
| comGA/cglA/cilD | Streptococcus mitis NCTC 12261 |
62.379 |
96.285 |
0.601 |
| comGA/cglA/cilD | Streptococcus pneumoniae Rx1 |
61.415 |
96.285 |
0.591 |
| comGA/cglA/cilD | Streptococcus pneumoniae D39 |
61.415 |
96.285 |
0.591 |
| comGA/cglA/cilD | Streptococcus pneumoniae R6 |
61.415 |
96.285 |
0.591 |
| comGA/cglA/cilD | Streptococcus pneumoniae TIGR4 |
61.415 |
96.285 |
0.591 |
| comGA/cglA | Streptococcus sobrinus strain NIDR 6715-7 |
61.613 |
95.975 |
0.591 |
| comGA | Lactococcus lactis subsp. cremoris KW2 |
50.311 |
99.69 |
0.502 |