Detailed information NTG1159637

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: QOR57_RS01110
• Genome accession: NZ_OX461088
• Coordinates: 189057..190100 (+)
• Length: 347 a.a.
• NCBI ID: WP_228322108.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae isolate MRI Z2-338
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 184057..195100

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QOR57_RS01100	-	187655..188020 (+)	366	WP_000285373.1	DUF1033 family protein	-
QOR57_RS01105	comYA	188192..189163 (+)	972	WP_000250799.1	competence type IV pilus ATPase ComGA	Machinery gene
QOR57_RS01110	comYB	189057..190100 (+)	1044	WP_228322108.1	competence type IV pilus assembly protein ComGB	Machinery gene
QOR57_RS01115	comGC/cglC	190097..190426 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
QOR57_RS01120	comYD	190401..190814 (+)	414	WP_017646959.1	competence type IV pilus minor pilin ComGD	Machinery gene
QOR57_RS01125	comGE	190786..191085 (+)	300	WP_025195478.1	competence type IV pilus minor pilin ComGE	-
QOR57_RS01130	comGF	191039..191500 (+)	462	WP_001874060.1	competence type IV pilus minor pilin ComGF	-
QOR57_RS01135	comGG	191478..191849 (+)	372	WP_000601103.1	competence type IV pilus minor pilin ComGG	-
QOR57_RS01140	comYH	191964..192938 (+)	975	WP_001008568.1	class I SAM-dependent methyltransferase	Machinery gene
QOR57_RS01145	-	192970..194163 (+)	1194	WP_000047537.1	acetate kinase	-
QOR57_RS01150	-	194315..194521 (+)	207	WP_000798241.1	helix-turn-helix transcriptional regulator	-
QOR57_RS01155	-	194580..194717 (+)	138	WP_079263416.1	hypothetical protein	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 39961.70 Da
• Isoelectric Point: 9.9642

>NTDB_id=1159637 QOR57_RS01110 WP_228322108.1 189057..190100(+) (comYB) [Streptococcus agalactiae isolate MRI Z2-338]
MDKWISWLKKDISVRNRHKSKKLSLKKQRKVVQLFNNLFASGFSLTDMVTFLKRSKLLSDCYTDRMNKALLEGKDLSKML
GELGFSDTVITQVALADLHGNISRSLLKIESYLANLLLVRKKVIEVAAYPLILLSFLVLIMIGLRNYLMPQLGENNFATR
LITNVPNIFLLLLAVVLIFSLIFYIIQKRLSRIKVACFLTTIPLVGSYVKLYLTAYYAREWGNLLSQGVELDQIVKVMQN
QKSKLFREIGYDMEEGFLSGKAFHQKVLDYPFFLTELSLMIEYGQVKAKLGTELDIYADEKWEDFFTKLARATQLIQPVI
FIFVALIIVMIYAAMLLPMYQNMEILS

Nucleotide

• Length: 1044 bp

>NTDB_id=1159637 QOR57_RS01110 WP_228322108.1 189057..190100(+) (comYB) [Streptococcus agalactiae isolate MRI Z2-338]
ATAGACAAGTGGATATCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAA
ACAACGGAAAGTAGTCCAACTTTTTAATAATCTTTTTGCTAGTGGTTTTTCTTTAACTGATATGGTCACCTTCTTAAAGA
GGAGTAAGTTATTGTCTGATTGTTATACAGATAGGATGAATAAGGCATTATTAGAGGGAAAAGATTTATCAAAAATGTTA
GGAGAGTTAGGTTTTTCTGACACTGTTATCACACAGGTTGCATTAGCTGATTTGCATGGTAACATTTCAAGGAGCCTACT
AAAGATTGAGTCTTATTTAGCTAATCTTTTGTTAGTTAGAAAAAAAGTAATAGAAGTAGCTGCTTACCCATTGATATTAT
TGTCTTTTCTGGTGCTAATTATGATTGGCCTTAGGAATTATTTAATGCCCCAATTAGGAGAAAATAATTTTGCAACTAGA
CTGATTACAAATGTGCCGAATATTTTCTTATTACTTTTAGCAGTTGTACTTATTTTTAGTTTAATATTTTATATTATTCA
AAAGCGATTGTCGCGCATTAAAGTAGCTTGTTTTTTAACAACAATTCCCTTAGTTGGATCATATGTTAAGCTTTATTTAA
CTGCTTACTATGCCCGTGAGTGGGGAAATTTATTAAGTCAAGGTGTTGAATTGGACCAAATTGTTAAAGTAATGCAAAAT
CAGAAATCCAAACTTTTTAGGGAAATAGGGTATGACATGGAAGAAGGTTTTCTATCAGGTAAAGCATTTCACCAAAAAGT
ATTAGACTATCCGTTTTTCTTAACTGAGCTTAGTTTAATGATTGAATATGGTCAAGTTAAGGCGAAATTAGGAACAGAGT
TAGATATATATGCTGATGAGAAGTGGGAGGATTTTTTTACAAAATTAGCTAGAGCGACCCAGTTAATCCAACCCGTTATT
TTTATTTTTGTAGCTCTTATCATTGTTATGATTTATGCAGCAATGCTGTTACCAATGTATCAAAATATGGAGATATTATC
ATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (218-338)

• Type II secretion system (T2SS), protein F (T2SSF) (33-150)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	62.17	98.271	0.611
comYB	Streptococcus mutans UA159	61.877	98.271	0.608
comYB	Streptococcus gordonii str. Challis substr. CH1	56.012	98.271	0.55
comGB/cglB	Streptococcus mitis NCTC 12261	54.925	96.542	0.53
comGB/cglB	Streptococcus mitis SK321	54.328	96.542	0.524
comGB/cglB	Streptococcus pneumoniae Rx1	53.433	96.542	0.516
comGB/cglB	Streptococcus pneumoniae D39	53.433	96.542	0.516
comGB/cglB	Streptococcus pneumoniae R6	53.433	96.542	0.516
comGB/cglB	Streptococcus pneumoniae TIGR4	53.433	96.542	0.516
comGB	Lactococcus lactis subsp. cremoris KW2	50.148	97.118	0.487