Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   QOR44_RS01105 Genome accession   NZ_OX460931
Coordinates   188194..189165 (+) Length   323 a.a.
NCBI ID   WP_283572657.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-174     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183194..194165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR44_RS01095 rpoC 183893..187543 (+) 3651 WP_000228729.1 DNA-directed RNA polymerase subunit beta' -
  QOR44_RS01100 - 187657..188022 (+) 366 WP_000285373.1 DUF1033 family protein -
  QOR44_RS01105 comYA 188194..189165 (+) 972 WP_283572657.1 competence type IV pilus ATPase ComGA Machinery gene
  QOR44_RS01110 comYB 189059..190102 (+) 1044 WP_228322108.1 competence type IV pilus assembly protein ComGB Machinery gene
  QOR44_RS01115 comGC/cglC 190099..190428 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  QOR44_RS01120 comYD 190403..190816 (+) 414 WP_017646959.1 competence type IV pilus minor pilin ComGD Machinery gene
  QOR44_RS01125 comGE 190842..191087 (+) 246 WP_283572658.1 competence type IV pilus minor pilin ComGE -
  QOR44_RS01130 comGF 191041..191502 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF -
  QOR44_RS01135 comGG 191480..191851 (+) 372 WP_000601103.1 competence type IV pilus minor pilin ComGG -
  QOR44_RS01140 comYH 191966..192940 (+) 975 WP_001008568.1 class I SAM-dependent methyltransferase Machinery gene
  QOR44_RS01145 - 192972..194165 (+) 1194 WP_000047537.1 acetate kinase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 36846.32 Da        Isoelectric Point: 6.9167

>NTDB_id=1158857 QOR44_RS01105 WP_283572657.1 188194..189165(+) (comYA) [Streptococcus agalactiae isolate MRI Z2-174]
MVQSLAKHVIHQAVEVNAQDIYIIPKGDCYELYMRIDDERRFIDVFEFNRMASLISHFKFVAGMNVGEKRRSQLGSCDYE
LSEGRLISLRLSSVGDYRGQESLVIRILYSGHQDLKYWFDNIKQMKEVLGTRGLYLFSGPVGSGKTTLMYQFASEVFKNK
QIITIEDPVEIKNDKMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSIPGV
YDRLIELGVNYQELENSLKLIAYQRLIGGGSLIDFETGNFKKHSSDKWNRQVDILAEEGHISKKQAQVEKIIPQETTESS
PTF

Nucleotide


Download         Length: 972 bp        

>NTDB_id=1158857 QOR44_RS01105 WP_283572657.1 188194..189165(+) (comYA) [Streptococcus agalactiae isolate MRI Z2-174]
ATGGTTCAATCATTAGCAAAGCACGTCATTCATCAGGCAGTAGAAGTAAATGCTCAAGATATTTATATCATTCCCAAAGG
TGATTGTTATGAACTCTATATGCGTATTGATGATGAAAGGCGGTTTATTGATGTTTTTGAGTTTAATAGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGCATGAACGTTGGAGAAAAAAGACGAAGTCAATTAGGTTCTTGTGACTATGAA
CTGTCAGAGGGAAGACTGATTTCATTACGACTATCGAGTGTGGGAGATTATCGTGGTCAAGAATCTTTAGTTATTCGTAT
TTTGTATTCAGGTCATCAGGACTTAAAATATTGGTTTGATAATATAAAGCAAATGAAGGAAGTACTGGGTACAAGAGGGC
TATATCTTTTTTCCGGCCCTGTGGGGAGTGGTAAAACAACTCTCATGTATCAATTCGCTTCAGAAGTATTTAAAAATAAG
CAAATTATCACGATTGAAGATCCGGTAGAAATCAAGAATGACAAGATGTTACAACTCCAATTGAATGAGGATATTGGAAT
GACTTATGATGCTTTAATCAAACTGTCTTTACGGCATCGTCCAGATATTTTAATTATCGGAGAGATTAGAGATCAAGCGA
CGGCTCGTGCTGTTATTCGTGCAAGTTTAACGGGAGTGATGGTTTTTTCTACTATTCATGCTAAAAGTATTCCCGGAGTC
TATGATAGGCTTATAGAATTAGGGGTTAACTATCAAGAGTTAGAAAATAGTCTAAAATTAATAGCATATCAACGTTTAAT
TGGAGGAGGAAGCCTAATTGACTTTGAGACAGGTAACTTTAAAAAACACTCATCAGACAAGTGGAATAGACAAGTGGATA
TCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAAACAACGGAAAGTAGT
CCAACTTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

68.81

96.285

0.663
  comYA Streptococcus mutans UA140

68.81

96.285

0.663
  comYA Streptococcus gordonii str. Challis substr. CH1

63.323

98.762

0.625
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

62.379

96.285

0.601
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

61.415

96.285

0.591
  comGA/cglA/cilD Streptococcus pneumoniae R6

61.415

96.285

0.591
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

61.415

96.285

0.591
  comGA/cglA/cilD Streptococcus pneumoniae D39

61.415

96.285

0.591
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.613

95.975

0.591
  comGA Lactococcus lactis subsp. cremoris KW2

50.311

99.69

0.502

Multiple sequence alignment