Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   QOS47_RS01315 Genome accession   NZ_OX460909
Coordinates   277775..279496 (+) Length   573 a.a.
NCBI ID   WP_082954314.1    Uniprot ID   A0AAW4ZXK1
Organism   Photobacterium phosphoreum strain MIP2473 isolate MIP2473     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 272775..284496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOS47_RS01295 pilM 275073..276050 (+) 978 WP_107197126.1 type IV pilus assembly protein PilM -
  QOS47_RS01300 - 276047..276658 (+) 612 WP_045028941.1 PilN domain-containing protein -
  QOS47_RS01305 - 276651..277235 (+) 585 WP_045028943.1 type 4a pilus biogenesis protein PilO -
  QOS47_RS01310 - 277246..277761 (+) 516 WP_045028944.1 pilus assembly protein PilP -
  QOS47_RS01315 pilQ 277775..279496 (+) 1722 WP_082954314.1 type IV pilus secretin PilQ family protein Machinery gene
  QOS47_RS01320 aroK 279882..280400 (+) 519 WP_036789489.1 shikimate kinase AroK -
  QOS47_RS01325 aroB 280424..281503 (+) 1080 WP_045028947.1 3-dehydroquinate synthase -
  QOS47_RS01330 - 281527..282981 (+) 1455 WP_283596890.1 AAA family ATPase -
  QOS47_RS01335 dam 283090..283926 (+) 837 WP_045028950.1 adenine-specific DNA-methyltransferase -
  QOS47_RS01340 - 283936..284133 (-) 198 WP_107197124.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 62407.27 Da        Isoelectric Point: 5.0671

>NTDB_id=1158768 QOS47_RS01315 WP_082954314.1 277775..279496(+) (pilQ) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
MKGNTWGLSRQIFASVWLMCWGLLTVTNVTAAPVSGVTNQVQDIEFRRDSKGRGVVTIKLQQPQSLVDFRRQGKQLQLDI
FDTQLTNEQVHTLDVVDFSTVVNSIDTSNVASGARFMFKLSGDYDYDYRIRGNNLEVTLIKRVQPKATSATNKSNVSYKG
KPISINFQDIPVRNVLQLIADYNDFNLVVADTVSGNVTLRLDNVPWPQVLDIILQAKGLDKRVRGSVLLVAPKAELAANE
HQVMETARKQQELASLRSELIQINYAKATDISTLLSGSTDGVGMLSERGSLHVDERTNALIIKDTPDNIASIKDIVLALD
IPVKQVQIEARIVTIDEGNIDELGVRWGVSSIDGDTTIGGSIEGNLGSSGLLDDTSVDDFLNVNLGATQAGASSIAFQVA
KLGNVLLDLELSALQSERKAEIISSPRLMTTNKKTAYIEQGTEIPYLEASSSGAVSVDFKKAVLSLMVTPQITPDNKLVL
DLEVTQDSKGEEVPTGVGTAVAIKTQRIGTQVLVNNGETVVLGGIYQNQVNNTVRKVPILGDIPVLGALFRHKMEELGKR
ELLIFVTPKIVMQ

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=1158768 QOS47_RS01315 WP_082954314.1 277775..279496(+) (pilQ) [Photobacterium phosphoreum strain MIP2473 isolate MIP2473]
ATGAAAGGGAATACGTGGGGGCTTAGCCGCCAGATTTTCGCCAGTGTATGGTTAATGTGTTGGGGTTTACTGACCGTAAC
CAACGTCACAGCTGCGCCAGTGAGTGGGGTCACTAATCAAGTTCAAGACATTGAGTTTCGTCGTGATAGTAAAGGCCGAG
GAGTGGTAACGATAAAGTTACAACAGCCTCAATCATTGGTCGATTTTCGTCGCCAAGGCAAGCAGTTACAGCTAGATATC
TTTGATACTCAATTAACCAATGAGCAAGTACACACGCTAGACGTCGTTGATTTTTCGACAGTCGTTAACAGTATTGATAC
CAGTAATGTAGCGAGTGGGGCGCGGTTTATGTTTAAGCTGAGTGGGGACTATGACTATGATTATCGTATTCGAGGTAATA
ATCTTGAGGTTACGTTAATTAAACGGGTGCAACCTAAAGCAACCTCTGCGACCAATAAGAGCAATGTTTCTTATAAGGGC
AAGCCGATCTCAATCAATTTTCAAGACATTCCCGTCCGTAACGTATTGCAGTTAATCGCAGACTATAATGACTTTAACTT
AGTGGTCGCTGATACTGTCAGCGGTAATGTGACGCTACGATTAGATAACGTGCCATGGCCACAAGTCTTGGACATTATCT
TACAAGCCAAAGGGTTGGATAAACGGGTACGAGGGTCGGTATTATTGGTTGCTCCTAAGGCTGAATTAGCTGCCAATGAG
CATCAAGTGATGGAAACTGCGCGTAAACAGCAAGAATTAGCCAGTTTACGTTCAGAACTGATACAAATTAATTACGCTAA
AGCCACTGATATCTCAACATTACTCAGTGGCTCAACAGATGGTGTTGGAATGTTGTCTGAGCGTGGCTCTCTGCATGTTG
ATGAACGAACTAACGCATTGATAATTAAAGATACACCAGATAATATCGCCAGCATTAAAGATATTGTGTTGGCATTAGAT
ATTCCAGTAAAGCAGGTACAAATTGAAGCGCGTATTGTCACCATAGATGAAGGTAATATCGATGAACTTGGCGTGCGCTG
GGGAGTATCGAGTATCGATGGTGATACCACTATTGGTGGGTCAATTGAAGGTAATCTTGGCAGTTCTGGATTGCTAGATG
ACACCAGTGTCGATGATTTTCTTAATGTCAATTTAGGGGCGACTCAAGCTGGGGCTTCTAGTATTGCGTTTCAAGTGGCC
AAGTTAGGTAATGTATTATTAGATCTTGAATTGTCAGCGTTGCAGTCAGAGCGTAAAGCCGAAATTATCTCAAGCCCACG
TCTTATGACGACCAACAAAAAAACCGCTTATATTGAACAAGGTACTGAAATTCCATACCTAGAAGCATCATCAAGTGGTG
CGGTGTCAGTTGATTTTAAAAAGGCAGTATTAAGCCTGATGGTGACGCCTCAAATTACCCCTGATAATAAGTTAGTATTA
GACTTGGAAGTGACCCAAGACAGTAAAGGCGAAGAGGTACCCACTGGGGTAGGTACAGCGGTGGCGATTAAGACCCAGCG
GATTGGTACTCAAGTGTTAGTCAACAATGGTGAAACTGTCGTATTAGGTGGTATTTATCAAAATCAAGTCAACAATACGG
TTCGTAAAGTACCTATTCTTGGTGATATTCCCGTACTTGGTGCATTATTTAGGCATAAAATGGAAGAGCTTGGAAAACGT
GAATTATTAATTTTTGTGACGCCAAAAATTGTGATGCAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(259-325)

Bacterial type II and III secretion system protein (Secretin)

(413-571)

Secretin and TonB N terminus short domain (STN)

(185-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

59.683

99.127

0.592
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

59.683

99.127

0.592
  pilQ Vibrio campbellii strain DS40M4

60.584

95.637

0.579
  pilQ Pseudomonas aeruginosa PAK

43.085

98.429

0.424
  comQ Acinetobacter baylyi ADP1

41.608

99.825

0.415
  pilQ Acinetobacter baumannii D1279779

39.286

100

0.403
  pilQ Acinetobacter baumannii strain A118

39.286

100

0.403
  pilQ Legionella pneumophila strain Lp02

42.385

95.113

0.403
  pilQ Legionella pneumophila strain ERS1305867

42.385

95.113

0.403

Multiple sequence alignment