Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   C163_RS24380 Genome accession   NZ_CP007012
Coordinates   5547628..5548896 (-) Length   422 a.a.
NCBI ID   WP_081742328.1    Uniprot ID   A0AAI8AXV6
Organism   Pseudomonas sp. FGI182     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5542628..5553896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C163_RS24365 (C163_24775) - 5544261..5545895 (-) 1635 WP_025340955.1 SPOR domain-containing protein -
  C163_RS24370 (C163_24780) aroB 5545911..5547008 (-) 1098 WP_015272135.1 3-dehydroquinate synthase -
  C163_RS24375 (C163_24785) aroK 5547105..5547623 (-) 519 WP_025340956.1 shikimate kinase AroK -
  C163_RS24380 (C163_24790) pilQ 5547628..5548896 (-) 1269 WP_081742328.1 type IV pilus secretin PilQ Machinery gene
  C163_RS24385 (C163_24795) - 5548820..5549821 (-) 1002 WP_025340958.1 pilus assembly protein PilP -
  C163_RS24390 (C163_24800) - 5549833..5550369 (-) 537 WP_025340959.1 PilN domain-containing protein -
  C163_RS24395 (C163_24805) pilM 5550366..5551247 (-) 882 WP_025340960.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45853.70 Da        Isoelectric Point: 4.8419

>NTDB_id=115702 C163_RS24380 WP_081742328.1 5547628..5548896(-) (pilQ) [Pseudomonas sp. FGI182]
MKTLMKWMLAALLPVPLASATPYQGEPLSLNFQDVEVRSVLQVLADYAGVNLVASDAVQGSVTLRLQDVPWDQALDLVLR
SKGLARRQEGNVLLVAPAAEFAAQSVDARVGQALDAQLQPLRRELLPIHHAKAAELAELLLASLADDGILTGRGSLSVDE
RTNTLVVHQPADRLAELRQLVAQLDVPVRQVAIEARIVEANVDYEKSLGVRWGGLLYVEDPLPGKDLFVDLGVERVGGSI
GLGLLRGDVLLDLELSAMEKSGNGEIVSQPKVVTADKETARILKGTEVPYQETSKSGVTSVAFREASLSLEVTPQITPDN
KVIMTVRVTKDEPDYVNALNNVPPIRKNEVNAKVRVVDGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEK
KSELLVFLTPRIMSDQAIAVSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=115702 C163_RS24380 WP_081742328.1 5547628..5548896(-) (pilQ) [Pseudomonas sp. FGI182]
ATGAAAACATTGATGAAATGGATGCTGGCAGCCCTGCTGCCGGTCCCGCTGGCGTCGGCGACGCCTTATCAGGGTGAACC
ACTGTCGCTGAACTTCCAGGATGTGGAAGTGCGCTCGGTGCTGCAGGTGCTGGCTGACTATGCTGGCGTCAACCTGGTCG
CCAGCGATGCCGTGCAGGGTAGCGTCACCTTGCGCTTGCAGGATGTGCCATGGGATCAGGCGCTGGACCTGGTGCTACGC
AGCAAGGGCCTGGCCCGGCGCCAGGAGGGCAATGTGCTGCTGGTGGCGCCTGCGGCCGAGTTTGCCGCGCAGTCTGTCGA
TGCTCGTGTGGGCCAGGCGCTGGATGCGCAGTTGCAGCCGTTGCGCCGGGAGCTGTTGCCCATCCATCACGCCAAGGCCG
CCGAACTTGCGGAGCTGCTGCTGGCGAGCCTGGCAGATGACGGCATCCTCACCGGTCGGGGCAGCCTGAGTGTCGATGAG
CGCACCAATACGCTGGTGGTGCACCAGCCGGCCGACCGCCTTGCCGAGCTGAGGCAACTGGTGGCGCAGCTGGATGTGCC
GGTGCGTCAGGTGGCGATCGAGGCGCGTATCGTCGAGGCCAACGTCGATTACGAAAAAAGCCTGGGGGTGCGCTGGGGTG
GGCTGCTTTACGTTGAAGACCCGCTGCCGGGCAAGGACCTGTTCGTCGACCTAGGGGTGGAGCGGGTGGGCGGCAGCATC
GGCCTGGGCCTGCTGCGTGGCGACGTGCTGCTCGACCTGGAGCTCAGTGCCATGGAAAAGAGCGGCAACGGCGAAATCGT
CTCGCAGCCCAAGGTGGTCACGGCCGACAAGGAAACGGCCAGGATCCTCAAGGGTACCGAGGTGCCGTATCAGGAAACCA
GCAAGAGCGGTGTCACCTCGGTAGCGTTCCGCGAAGCCTCGCTGTCGCTGGAGGTGACCCCGCAGATCACCCCGGACAAC
AAGGTGATCATGACCGTCAGGGTGACCAAGGACGAGCCGGATTACGTCAATGCCTTGAACAACGTACCGCCGATCCGCAA
GAACGAGGTCAATGCCAAGGTTCGCGTGGTGGACGGTGAAACGATCGTGATTGGTGGCGTGTACTCGACTTCGCAAAACA
ATGTGGTCGACAAGGTGCCATTTTTCGGCGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCGATGCATTACAAGAGAAA
AAATCCGAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(257-413)

Secretin and TonB N terminus short domain (STN)

(51-97)

Bacterial type II/III secretion system short domain (Secretin_N)

(125-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

59.404

100

0.614
  pilQ Acinetobacter baumannii strain A118

41.649

100

0.455
  pilQ Acinetobacter baumannii D1279779

41.649

100

0.455
  comQ Acinetobacter baylyi ADP1

41.814

100

0.448
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

41.299

100

0.422
  pilQ Vibrio cholerae strain A1552

41.299

100

0.422
  pilQ Legionella pneumophila strain ERS1305867

42.344

99.052

0.419
  pilQ Legionella pneumophila strain Lp02

42.344

99.052

0.419
  pilQ Vibrio campbellii strain DS40M4

40.278

100

0.412
  pilQ Neisseria gonorrhoeae strain FA1090

36.603

99.052

0.363

Multiple sequence alignment