Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | QMX76_RS03085 | Genome accession | NZ_OX411212 |
| Coordinates | 640426..640839 (-) | Length | 137 a.a. |
| NCBI ID | WP_282248683.1 | Uniprot ID | - |
| Organism | Vibrio campbellii isolate BF5_0283 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 635426..645839
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMX76_RS03065 | coaE | 635925..636539 (-) | 615 | WP_012128880.1 | dephospho-CoA kinase | - |
| QMX76_RS03070 | pilD | 636540..637409 (-) | 870 | WP_282248680.1 | A24 family peptidase | Machinery gene |
| QMX76_RS03075 | pilC | 637482..638705 (-) | 1224 | WP_282248681.1 | type II secretion system F family protein | Machinery gene |
| QMX76_RS03080 | pilB | 638740..640425 (-) | 1686 | WP_282248682.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QMX76_RS03085 | pilA | 640426..640839 (-) | 414 | WP_282248683.1 | pilin | Machinery gene |
| QMX76_RS03090 | nadC | 641105..641992 (-) | 888 | WP_282248684.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| QMX76_RS03095 | ampD | 642085..642636 (+) | 552 | WP_282248685.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| QMX76_RS03100 | pdhR | 643041..643808 (+) | 768 | WP_005428674.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 13917.79 Da Isoelectric Point: 7.8168
>NTDB_id=1156277 QMX76_RS03085 WP_282248683.1 640426..640839(-) (pilA) [Vibrio campbellii isolate BF5_0283]
MKTNKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYKDYVSKSELASGFATIKSVITPAELYIQENGAISGASPSDLGVSA
GANSLGTLSISGNAVVFTHNNGAVSGAAFTYSRDTSSGWTCALTGQPTGVDAPKGCS
MKTNKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYKDYVSKSELASGFATIKSVITPAELYIQENGAISGASPSDLGVSA
GANSLGTLSISGNAVVFTHNNGAVSGAAFTYSRDTSSGWTCALTGQPTGVDAPKGCS
Nucleotide
Download Length: 414 bp
>NTDB_id=1156277 QMX76_RS03085 WP_282248683.1 640426..640839(-) (pilA) [Vibrio campbellii isolate BF5_0283]
ATGAAAACGAATAAACAGAAGAAACAGCAGGGTTTTACTCTGATTGAATTGATGATTGTGGTAGCGATTATTGGTGTTTT
GTCCGCAATTGCAGTCCCTGCATATAAAGATTATGTATCGAAAAGTGAGCTAGCGTCTGGTTTCGCTACGATAAAGTCCG
TAATCACTCCTGCTGAATTATATATACAAGAAAATGGGGCTATCTCTGGGGCGAGCCCAAGTGACTTGGGCGTATCTGCT
GGTGCCAACAGCCTAGGAACGTTATCAATCAGCGGAAACGCAGTTGTCTTTACTCACAACAATGGCGCTGTATCTGGTGC
AGCTTTCACATATAGCAGAGACACTAGCTCCGGTTGGACATGTGCTTTAACTGGACAACCTACTGGTGTTGATGCACCAA
AGGGCTGTTCATAG
ATGAAAACGAATAAACAGAAGAAACAGCAGGGTTTTACTCTGATTGAATTGATGATTGTGGTAGCGATTATTGGTGTTTT
GTCCGCAATTGCAGTCCCTGCATATAAAGATTATGTATCGAAAAGTGAGCTAGCGTCTGGTTTCGCTACGATAAAGTCCG
TAATCACTCCTGCTGAATTATATATACAAGAAAATGGGGCTATCTCTGGGGCGAGCCCAAGTGACTTGGGCGTATCTGCT
GGTGCCAACAGCCTAGGAACGTTATCAATCAGCGGAAACGCAGTTGTCTTTACTCACAACAATGGCGCTGTATCTGGTGC
AGCTTTCACATATAGCAGAGACACTAGCTCCGGTTGGACATGTGCTTTAACTGGACAACCTACTGGTGTTGATGCACCAA
AGGGCTGTTCATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
51.408 |
100 |
0.533 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.132 |
100 |
0.445 |
| pilA | Vibrio cholerae strain A1552 |
40.132 |
100 |
0.445 |
| pilA | Vibrio cholerae C6706 |
40.132 |
100 |
0.445 |
| pilA | Acinetobacter baumannii strain A118 |
40.69 |
100 |
0.431 |
| pilA | Pseudomonas aeruginosa PAK |
38 |
100 |
0.416 |