Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QMX76_RS03070 Genome accession   NZ_OX411212
Coordinates   636540..637409 (-) Length   289 a.a.
NCBI ID   WP_282248680.1    Uniprot ID   -
Organism   Vibrio campbellii isolate BF5_0283     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 631540..642409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMX76_RS03045 rplS 632203..632556 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  QMX76_RS03050 ltrA 633189..634481 (+) 1293 WP_345774829.1 group II intron reverse transcriptase/maturase -
  QMX76_RS03055 yacG 634900..635100 (-) 201 WP_012128882.1 DNA gyrase inhibitor YacG -
  QMX76_RS03060 zapD 635157..635897 (-) 741 WP_282248679.1 cell division protein ZapD -
  QMX76_RS03065 coaE 635925..636539 (-) 615 WP_012128880.1 dephospho-CoA kinase -
  QMX76_RS03070 pilD 636540..637409 (-) 870 WP_282248680.1 A24 family peptidase Machinery gene
  QMX76_RS03075 pilC 637482..638705 (-) 1224 WP_282248681.1 type II secretion system F family protein Machinery gene
  QMX76_RS03080 pilB 638740..640425 (-) 1686 WP_282248682.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QMX76_RS03085 pilA 640426..640839 (-) 414 WP_282248683.1 pilin Machinery gene
  QMX76_RS03090 nadC 641105..641992 (-) 888 WP_282248684.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32531.85 Da        Isoelectric Point: 7.8751

>NTDB_id=1156274 QMX76_RS03070 WP_282248680.1 636540..637409(-) (pilD) [Vibrio campbellii isolate BF5_0283]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCKAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLVIAGWVSLIWGHQILNWYFTSILGV

Nucleotide


Download         Length: 870 bp        

>NTDB_id=1156274 QMX76_RS03070 WP_282248680.1 636540..637409(-) (pilD) [Vibrio campbellii isolate BF5_0283]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTAATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAACTGCAAAGCGCCCATCAGTGCTCGCTATCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
GGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGCTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGTGATTGC
TGGTTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

97.924

100

0.979
  pilD Vibrio cholerae strain A1552

75.694

99.654

0.754
  pilD Acinetobacter nosocomialis M2

51.825

94.81

0.491
  pilD Acinetobacter baumannii D1279779

52.03

93.772

0.488
  pilD Neisseria gonorrhoeae MS11

45.652

95.502

0.436

Multiple sequence alignment