Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | QMX76_RS03075 | Genome accession | NZ_OX411212 |
| Coordinates | 637482..638705 (-) | Length | 407 a.a. |
| NCBI ID | WP_282248681.1 | Uniprot ID | - |
| Organism | Vibrio campbellii isolate BF5_0283 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 632482..643705
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMX76_RS03050 | ltrA | 633189..634481 (+) | 1293 | WP_345774829.1 | group II intron reverse transcriptase/maturase | - |
| QMX76_RS03055 | yacG | 634900..635100 (-) | 201 | WP_012128882.1 | DNA gyrase inhibitor YacG | - |
| QMX76_RS03060 | zapD | 635157..635897 (-) | 741 | WP_282248679.1 | cell division protein ZapD | - |
| QMX76_RS03065 | coaE | 635925..636539 (-) | 615 | WP_012128880.1 | dephospho-CoA kinase | - |
| QMX76_RS03070 | pilD | 636540..637409 (-) | 870 | WP_282248680.1 | A24 family peptidase | Machinery gene |
| QMX76_RS03075 | pilC | 637482..638705 (-) | 1224 | WP_282248681.1 | type II secretion system F family protein | Machinery gene |
| QMX76_RS03080 | pilB | 638740..640425 (-) | 1686 | WP_282248682.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QMX76_RS03085 | pilA | 640426..640839 (-) | 414 | WP_282248683.1 | pilin | Machinery gene |
| QMX76_RS03090 | nadC | 641105..641992 (-) | 888 | WP_282248684.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| QMX76_RS03095 | ampD | 642085..642636 (+) | 552 | WP_282248685.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 44966.22 Da Isoelectric Point: 10.3971
>NTDB_id=1156275 QMX76_RS03075 WP_282248681.1 637482..638705(-) (pilC) [Vibrio campbellii isolate BF5_0283]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEVEVKERLDAQHIKIKKLRKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEVEVKERLDAQHIKIKKLRKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG
Nucleotide
Download Length: 1224 bp
>NTDB_id=1156275 QMX76_RS03075 WP_282248681.1 637482..638705(-) (pilC) [Vibrio campbellii isolate BF5_0283]
ATGAAAACCATCGCTCCTCAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACCGAAGTCGAGGTAAAAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAGGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACTATGCTA
ATGACGGGCGTACCCATTGTTCAGGCACTTAAGTTGGTTTCAGAAAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAGTGTCACACGAGCGGTAGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAGCAGTCCGGTAACCTATCTCAAGTCTTTGAGCGTTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCTGACTTACCCGCCTTCACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCTTTTATTGGACTGAGTTTTGTGAGTCTGCTCATTTCCGGC
AAAATAATGTCGCAACGATCCGATTCATTTCGCCTTTTAGCTGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCTGT
ATTATCCAAAGCCGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCTATGTATATTGCCATGCGTAACTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGACATGCTCAACAAGATAGCCGCTATTTATGAGTTTGAAGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGTGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG
ATGAAAACCATCGCTCCTCAACTTAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACCGAAGTCGAGGTAAAAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAGGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACTATGCTA
ATGACGGGCGTACCCATTGTTCAGGCACTTAAGTTGGTTTCAGAAAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAGTGTCACACGAGCGGTAGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAGCAGTCCGGTAACCTATCTCAAGTCTTTGAGCGTTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCTGACTTACCCGCCTTCACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCTTTTATTGGACTGAGTTTTGTGAGTCTGCTCATTTCCGGC
AAAATAATGTCGCAACGATCCGATTCATTTCGCCTTTTAGCTGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCTGT
ATTATCCAAAGCCGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCTATGTATATTGCCATGCGTAACTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGACATGCTCAACAAGATAGCCGCTATTTATGAGTTTGAAGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGTGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Vibrio campbellii strain DS40M4 |
99.017 |
100 |
0.99 |
| pilC | Vibrio cholerae strain A1552 |
73.25 |
98.28 |
0.72 |
| pilC | Acinetobacter baylyi ADP1 |
42.965 |
97.789 |
0.42 |
| pilC | Acinetobacter baumannii D1279779 |
40.943 |
99.017 |
0.405 |
| pilC | Pseudomonas stutzeri DSM 10701 |
41.414 |
97.297 |
0.403 |
| pilC | Legionella pneumophila strain ERS1305867 |
39.851 |
99.263 |
0.396 |
| pilG | Neisseria gonorrhoeae MS11 |
38.821 |
100 |
0.388 |
| pilG | Neisseria meningitidis 44/76-A |
37.99 |
100 |
0.381 |