Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ALTBGP6_RS14855 Genome accession   NZ_OX359237
Coordinates   3409023..3410231 (+) Length   402 a.a.
NCBI ID   WP_156086798.1    Uniprot ID   -
Organism   Alteromonas macleodii isolate Alteromonas macleodii EZ55     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3404023..3415231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALTBGP6_RS14830 (EZ55_03016) ampE 3404872..3405774 (-) 903 WP_039228009.1 beta-lactamase regulator AmpE -
  ALTBGP6_RS14835 (EZ55_03017) ampD 3405817..3406356 (-) 540 WP_156086796.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ALTBGP6_RS14840 (EZ55_03018) - 3406540..3407058 (+) 519 WP_156086797.1 TIGR02281 family clan AA aspartic protease -
  ALTBGP6_RS14845 (EZ55_03019) nadC 3407091..3407945 (+) 855 WP_156087360.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ALTBGP6_RS14850 (EZ55_03020) - 3408515..3408937 (+) 423 WP_275445343.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ALTBGP6_RS14855 (EZ55_03021) pilC 3409023..3410231 (+) 1209 WP_156086798.1 type II secretion system F family protein Machinery gene
  ALTBGP6_RS14860 (EZ55_03022) pilD 3410284..3411177 (+) 894 WP_014980024.1 A24 family peptidase Machinery gene
  ALTBGP6_RS14865 (EZ55_03023) coaE 3411196..3411807 (+) 612 WP_156086799.1 dephospho-CoA kinase -
  ALTBGP6_RS14870 (EZ55_03024) zapD 3412053..3412805 (+) 753 WP_039227984.1 cell division protein ZapD -
  ALTBGP6_RS14875 (EZ55_03025) yacG 3412939..3413166 (+) 228 WP_014950407.1 DNA gyrase inhibitor YacG -
  ALTBGP6_RS14880 (EZ55_03026) - 3413393..3414265 (+) 873 WP_156086800.1 aspartoacylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43754.52 Da        Isoelectric Point: 9.6701

>NTDB_id=1155731 ALTBGP6_RS14855 WP_156086798.1 3409023..3410231(+) (pilC) [Alteromonas macleodii isolate Alteromonas macleodii EZ55]
MAKAATVFIWQGKDRHGQSRKGEISATSLSEAKNLLRRQGISANKVKKLAKPLFGGGQKITPADISVISRQIATMLAAGV
TLIQSLEMIAQGHSKQSMRKLLAEITDEVKSGNPLSSALRKHPLYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEAL
KSKIKKAMFYPIAVLVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFVQDYGIFIAIGIGGAGFMFMRTY
KRSQKLRDTVDRNILKIPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVYREAILYMRKEVAGGMPMH
VAMRATQVFPDMVTQMIAIGEESGAVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFQMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=1155731 ALTBGP6_RS14855 WP_156086798.1 3409023..3410231(+) (pilC) [Alteromonas macleodii isolate Alteromonas macleodii EZ55]
ATGGCAAAAGCAGCAACGGTGTTCATTTGGCAAGGAAAAGACCGCCATGGTCAATCACGTAAGGGAGAAATTTCTGCCAC
TTCCTTATCCGAAGCAAAAAACCTTCTTCGTCGACAAGGGATCTCTGCCAACAAAGTAAAAAAACTAGCTAAACCACTTT
TCGGTGGTGGCCAAAAAATAACCCCAGCAGACATTTCTGTCATATCGCGTCAAATCGCCACCATGCTTGCCGCGGGTGTT
ACACTTATCCAATCGTTAGAAATGATTGCACAAGGTCACTCAAAGCAATCCATGCGGAAACTCTTAGCCGAAATTACCGA
TGAGGTTAAATCAGGTAACCCGCTCTCATCGGCGCTCAGAAAACACCCTCTTTATTTTGACGATTTATATTGCGACTTGG
TTTATACCGGTGAGCAGTCGGGCGCACTTGAAACCATTTATGACCGCATTGCGACCTATAAAGAAAAGGCCGAAGCACTA
AAATCAAAAATCAAAAAAGCGATGTTTTACCCTATCGCAGTTTTGGTTGTTGCTTTTATTGTTACGACTATCCTTCTTAT
ATTTGTTGTGCCGCAGTTTGAAGAGATTTTCAGCAGCTTTGGCGCAGAACTCCCTGCCTTCACCCAGTTCGTATTGGCTA
TTTCTCGGTTCGTCCAAGACTACGGTATTTTTATCGCCATAGGTATTGGTGGTGCTGGGTTTATGTTTATGCGCACCTAT
AAGCGAAGCCAGAAGCTACGTGACACGGTAGACCGCAACATTTTAAAAATTCCCGTTATCGGCGAGATACTAAAAAAAGC
CAGTATTGCGCGCTTTACCCGAACCCTAGCCACGACCTTTGCAGCAGGTGTGCCGCTTATTGGCGCACTAGAATCTGCCG
CAGGTGCTTCGGGCAACGCAGTATACCGCGAGGCCATTTTATACATGCGTAAAGAAGTGGCGGGCGGTATGCCAATGCAT
GTTGCAATGCGCGCTACACAAGTATTCCCTGACATGGTGACGCAGATGATTGCCATTGGTGAGGAGTCGGGCGCGGTTGA
TGAAATGCTTAGTAAAATTGCCACCATATACGAAGCTGAAGTCGATGATATGGTAGACGGTCTAACCAGCCTACTTGAAC
CTATGATCATGGCCGTGCTCGGAGTAGTAATCGGCGGCTTGATTGTGGCTATGTACCTCCCTATATTCCAGATGGGTAAC
GTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.438

98.756

0.577
  pilC Acinetobacter baumannii D1279779

52.357

100

0.525
  pilC Acinetobacter baylyi ADP1

52.513

99.005

0.52
  pilC Legionella pneumophila strain ERS1305867

52.778

98.507

0.52
  pilC Vibrio cholerae strain A1552

46.212

98.507

0.455
  pilG Neisseria meningitidis 44/76-A

45.05

100

0.453
  pilG Neisseria gonorrhoeae MS11

44.802

100

0.45
  pilC Vibrio campbellii strain DS40M4

43.655

98.01

0.428
  pilC Thermus thermophilus HB27

36.973

100

0.371

Multiple sequence alignment