Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ALTBGP6_RS14860 | Genome accession | NZ_OX359237 |
| Coordinates | 3410284..3411177 (+) | Length | 297 a.a. |
| NCBI ID | WP_014980024.1 | Uniprot ID | - |
| Organism | Alteromonas macleodii isolate Alteromonas macleodii EZ55 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3405284..3416177
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ALTBGP6_RS14835 (EZ55_03017) | ampD | 3405817..3406356 (-) | 540 | WP_156086796.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ALTBGP6_RS14840 (EZ55_03018) | - | 3406540..3407058 (+) | 519 | WP_156086797.1 | TIGR02281 family clan AA aspartic protease | - |
| ALTBGP6_RS14845 (EZ55_03019) | nadC | 3407091..3407945 (+) | 855 | WP_156087360.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ALTBGP6_RS14850 (EZ55_03020) | - | 3408515..3408937 (+) | 423 | WP_275445343.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| ALTBGP6_RS14855 (EZ55_03021) | pilC | 3409023..3410231 (+) | 1209 | WP_156086798.1 | type II secretion system F family protein | Machinery gene |
| ALTBGP6_RS14860 (EZ55_03022) | pilD | 3410284..3411177 (+) | 894 | WP_014980024.1 | A24 family peptidase | Machinery gene |
| ALTBGP6_RS14865 (EZ55_03023) | coaE | 3411196..3411807 (+) | 612 | WP_156086799.1 | dephospho-CoA kinase | - |
| ALTBGP6_RS14870 (EZ55_03024) | zapD | 3412053..3412805 (+) | 753 | WP_039227984.1 | cell division protein ZapD | - |
| ALTBGP6_RS14875 (EZ55_03025) | yacG | 3412939..3413166 (+) | 228 | WP_014950407.1 | DNA gyrase inhibitor YacG | - |
| ALTBGP6_RS14880 (EZ55_03026) | - | 3413393..3414265 (+) | 873 | WP_156086800.1 | aspartoacylase | - |
| ALTBGP6_RS14885 (EZ55_03027) | - | 3414353..3415642 (-) | 1290 | WP_156086801.1 | methyl-accepting chemotaxis protein | - |
| ALTBGP6_RS14890 (EZ55_03028) | - | 3415652..3416020 (-) | 369 | WP_014950410.1 | response regulator | - |
Sequence
Protein
Download Length: 297 a.a. Molecular weight: 32889.92 Da Isoelectric Point: 6.4480
>NTDB_id=1155732 ALTBGP6_RS14860 WP_014980024.1 3410284..3411177(+) (pilD) [Alteromonas macleodii isolate Alteromonas macleodii EZ55]
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSEGEPTPNDKNSTASEEVFNLVKPDST
CPSCGHKIRAWENIPVISYLFLKGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSEGEPTPNDKNSTASEEVFNLVKPDST
CPSCGHKIRAWENIPVISYLFLKGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL
Nucleotide
Download Length: 894 bp
>NTDB_id=1155732 ALTBGP6_RS14860 WP_014980024.1 3410284..3411177(+) (pilD) [Alteromonas macleodii isolate Alteromonas macleodii EZ55]
ATGGACGCGATAATTACGCTTAGTCAGCTTTACCCTGCTGTATTCTATTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAACGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAAAGCTATTTTA
GCGAGGGTGAGCCGACACCTAACGATAAAAACTCAACAGCGTCAGAGGAAGTATTCAACCTTGTAAAACCAGACAGCACA
TGCCCTAGCTGCGGCCACAAGATTCGCGCATGGGAAAATATTCCTGTTATTAGCTACCTATTCCTTAAAGGTAAATGCGC
TAAATGCAAAGTTGGAATATCAGTTCGATACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCACTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTGTTTATTGACTTAGAT
AAGATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTGGGGTTACTGTTGAGCACGCAACACATTTTTGTAGG
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGTTTATGGTCTGTTTATTGGCTATTTAAACTTGCCACTG
GCAAAGAAGGTATGGGCTATGGCGATTTCAAGCTGCTCGCCGCACTTGGCGCTTATACGGGCTGGCAAGGTTTGCCCATT
ATTATTTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTATCTTG
ATTACGTACTTTAG
ATGGACGCGATAATTACGCTTAGTCAGCTTTACCCTGCTGTATTCTATTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAACGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAAAGCTATTTTA
GCGAGGGTGAGCCGACACCTAACGATAAAAACTCAACAGCGTCAGAGGAAGTATTCAACCTTGTAAAACCAGACAGCACA
TGCCCTAGCTGCGGCCACAAGATTCGCGCATGGGAAAATATTCCTGTTATTAGCTACCTATTCCTTAAAGGTAAATGCGC
TAAATGCAAAGTTGGAATATCAGTTCGATACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCACTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTGTTTATTGACTTAGAT
AAGATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTGGGGTTACTGTTGAGCACGCAACACATTTTTGTAGG
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGTTTATGGTCTGTTTATTGGCTATTTAAACTTGCCACTG
GCAAAGAAGGTATGGGCTATGGCGATTTCAAGCTGCTCGCCGCACTTGGCGCTTATACGGGCTGGCAAGGTTTGCCCATT
ATTATTTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTATCTTG
ATTACGTACTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.439 |
95.96 |
0.532 |
| pilD | Vibrio campbellii strain DS40M4 |
53.448 |
97.643 |
0.522 |
| pilD | Acinetobacter baumannii D1279779 |
50.538 |
93.939 |
0.475 |
| pilD | Acinetobacter nosocomialis M2 |
50.179 |
93.939 |
0.471 |
| pilD | Neisseria gonorrhoeae MS11 |
47.94 |
89.899 |
0.431 |