Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   QNH68_RS00175 Genome accession   NZ_OX352944
Coordinates   28026..28976 (+) Length   316 a.a.
NCBI ID   WP_011921718.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160_LM_H     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 23026..33976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH68_RS00165 - 26597..26962 (+) 366 WP_002936568.1 DUF1033 family protein -
  QNH68_RS00170 - 26997..27940 (-) 944 Protein_17 S66 peptidase family protein -
  QNH68_RS00175 comYA 28026..28976 (+) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH68_RS00180 comYB 28888..29925 (+) 1038 WP_255304289.1 competence type IV pilus assembly protein ComGB Machinery gene
  QNH68_RS00185 comYC 29927..30208 (+) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  QNH68_RS00190 comGD 30189..30596 (+) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD -
  QNH68_RS00195 comYE 30568..30861 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  QNH68_RS00200 comGF/cglF 30848..31282 (+) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  QNH68_RS00205 comGG 31260..31670 (+) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG -
  QNH68_RS00210 comYH 31727..32680 (+) 954 WP_024406069.1 class I SAM-dependent methyltransferase Machinery gene
  QNH68_RS00215 - 32730..33917 (+) 1188 WP_012775473.1 acetate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35412.26 Da        Isoelectric Point: 5.4713

>NTDB_id=1155552 QNH68_RS00175 WP_011921718.1 28026..28976(+) (comYA) [Streptococcus suis isolate 861160_LM_H]
MIQEKARKMIEEAVADRVSDIYLVPRGECYQVYHRIMDDREFVQDLAEEEVTAIISHFKFLAGLNVGEKRRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSISGVY
ARMLELGVGPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSADQWNAQIDRLFAAGHISLRQAETEKITLGSPA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1155552 QNH68_RS00175 WP_011921718.1 28026..28976(+) (comYA) [Streptococcus suis isolate 861160_LM_H]
ATGATTCAAGAAAAAGCAAGAAAGATGATTGAAGAGGCGGTGGCGGATAGGGTCAGTGACATTTATCTGGTTCCTCGTGG
TGAGTGTTACCAAGTCTATCATCGTATCATGGACGATCGGGAATTTGTGCAAGACTTGGCTGAGGAGGAAGTAACAGCCA
TCATCAGCCATTTCAAGTTTTTAGCAGGTTTAAATGTTGGCGAAAAACGCCGTAGCCAGCAGGGTTCCTGTGACTATGAT
TATGGGAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGAGATTATCGTGGCAAGGAAAGTTTGGTTATCCGCCTGCT
CTATGACAATGACAAGGAACTCAAGTTCTGGTTTGAGGCGGCCGAGCGGCTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGTAAGACCACACTTATGTACCATCTTGCTAGGCTGAAATTCCCAGACAAGCAG
ATTTTGACCATCGAGGATCCTGTTGAAATCAAGCAGGAGGACATGCTGCAACTCCAGCTCAATGAAGCCATCGGAGCCAC
CTACGACAATCTGATCAAACTGTCCCTCCGTCATCGACCAGACTTGCTCATCATCGGTGAAATTCGGGATGCGGAAACCG
CTCGAGCAGTCATTCGAGCCAGCCTGACAGGAGCTACCGTTTTCTCAACAGTTCATGCAAGGTCTATTTCGGGTGTCTAT
GCTCGTATGTTGGAATTGGGTGTCGGTCCTGAGGAGTTAAACAATGCCCTTCAAGGTATTGCCTATCAACGTTTAATCGG
GGGAGGAGGTGTGGTAGATTTTGCAAAGGGAAATTACCAAAACCATTCCGCAGACCAGTGGAATGCGCAAATTGATCGGC
TTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTACCCTTGGCTCGCCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.387

98.101

0.671
  comYA Streptococcus mutans UA159

67.203

98.418

0.661
  comYA Streptococcus mutans UA140

67.203

98.418

0.661
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.63

98.418

0.636
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.516

98.101

0.633
  comGA Lactococcus lactis subsp. cremoris KW2

52.997

100

0.532
  comGA Latilactobacillus sakei subsp. sakei 23K

41.155

87.658

0.361

Multiple sequence alignment