Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QML72_RS01925 Genome accession   NZ_OX346411
Coordinates   359843..360313 (+) Length   156 a.a.
NCBI ID   WP_281957977.1    Uniprot ID   -
Organism   Enterococcus cecorum isolate CIRMBP-1287     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 354843..365313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML72_RS01905 (CIRMBP1287_00378) - 355259..356032 (+) 774 WP_052836427.1 thermonuclease family protein -
  QML72_RS01910 (CIRMBP1287_00379) - 356041..356766 (+) 726 WP_243180277.1 class A sortase -
  QML72_RS01915 (CIRMBP1287_00380) - 356805..357224 (+) 420 WP_243192884.1 hypothetical protein -
  QML72_RS01920 (CIRMBP1287_00381) - 357221..359383 (+) 2163 WP_171378620.1 type IA DNA topoisomerase -
  QML72_RS01925 (CIRMBP1287_00382) ssb 359843..360313 (+) 471 WP_281957977.1 single-stranded DNA-binding protein Machinery gene
  QML72_RS01930 (CIRMBP1287_00383) - 360388..360648 (+) 261 WP_047338919.1 hypothetical protein -
  QML72_RS01935 (CIRMBP1287_00384) - 360751..361044 (+) 294 WP_087216392.1 hypothetical protein -
  QML72_RS01940 (CIRMBP1287_00385) - 361121..361333 (+) 213 WP_047334073.1 hypothetical protein -
  QML72_RS01945 (CIRMBP1287_00386) - 361348..362166 (+) 819 WP_282007496.1 ParA family protein -
  QML72_RS01950 - 362262..362513 (+) 252 WP_047334075.1 hypothetical protein -
  QML72_RS01955 (CIRMBP1287_00387) - 362543..363928 (+) 1386 WP_282007497.1 ISLre2 family transposase -
  QML72_RS01960 (CIRMBP1287_00388) - 364590..365039 (+) 450 WP_047242399.1 YaiI/YqxD family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17620.47 Da        Isoelectric Point: 6.3633

>NTDB_id=1155234 QML72_RS01925 WP_281957977.1 359843..360313(+) (ssb) [Enterococcus cecorum isolate CIRMBP-1287]
MINNVTLVGRLTRDADLRYTASGVAVATFNLAVNRNYSNQNGERETDFINCVIWRKPAENLANYTRKGSLIGLTGRLQTR
NYENQQGQRVYVTEVIVENFQMLESREVTKNRKQAANQTNQASNPTNTTSQPTQPFMDYSSFGGQSVEISEDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1155234 QML72_RS01925 WP_281957977.1 359843..360313(+) (ssb) [Enterococcus cecorum isolate CIRMBP-1287]
ATGATTAACAACGTCACATTAGTAGGTAGATTAACAAGAGATGCAGACTTACGATATACTGCATCAGGAGTCGCAGTAGC
AACATTTAATTTAGCGGTTAATCGTAACTATAGCAATCAAAATGGCGAAAGAGAAACCGACTTTATCAATTGTGTGATTT
GGCGAAAACCTGCGGAAAATTTAGCAAATTATACAAGAAAAGGTAGCTTGATTGGTTTAACAGGTAGATTGCAAACAAGG
AATTATGAAAATCAACAAGGACAACGTGTGTATGTGACCGAAGTAATTGTAGAGAATTTTCAGATGTTAGAGTCCAGGGA
AGTCACTAAAAATCGCAAACAGGCAGCAAACCAAACTAATCAAGCATCTAATCCAACTAATACTACATCTCAACCAACAC
AACCATTTATGGATTATTCATCCTTTGGTGGCCAAAGTGTAGAAATTAGTGAAGATGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.647
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.581

100

0.558
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.846

75

0.404
  ssbB/cilA Streptococcus mitis NCTC 12261

50.847

75.641

0.385
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.847

75.641

0.385
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.066

87.821

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

50

75.641

0.378
  ssbB/cilA Streptococcus pneumoniae D39

50

75.641

0.378
  ssbB/cilA Streptococcus pneumoniae R6

50

75.641

0.378
  ssbB/cilA Streptococcus mitis SK321

50

75.641

0.378

Multiple sequence alignment