Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QML80_RS11295 Genome accession   NZ_OX346405
Coordinates   2229609..2230079 (-) Length   156 a.a.
NCBI ID   WP_047334078.1    Uniprot ID   -
Organism   Enterococcus cecorum isolate CIRMBP-1228     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2224609..2235079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML80_RS11260 (CIRMBP1228_02281) - 2225969..2226490 (-) 522 WP_281958668.1 hypothetical protein -
  QML80_RS11265 (CIRMBP1228_02282) - 2226487..2227353 (-) 867 WP_281958669.1 UPF0236 family protein -
  QML80_RS11270 - 2227383..2227634 (-) 252 WP_047334075.1 hypothetical protein -
  QML80_RS11275 (CIRMBP1228_02283) - 2227743..2228561 (-) 819 WP_171332645.1 ParA family protein -
  QML80_RS11280 (CIRMBP1228_02284) - 2228576..2228788 (-) 213 WP_047334073.1 hypothetical protein -
  QML80_RS11285 (CIRMBP1228_02285) - 2228878..2229171 (-) 294 WP_087216392.1 hypothetical protein -
  QML80_RS11290 (CIRMBP1228_02286) - 2229274..2229534 (-) 261 WP_087216412.1 hypothetical protein -
  QML80_RS11295 (CIRMBP1228_02287) ssb 2229609..2230079 (-) 471 WP_047334078.1 single-stranded DNA-binding protein Machinery gene
  QML80_RS11300 (CIRMBP1228_02288) - 2230539..2232701 (-) 2163 WP_281958670.1 type IA DNA topoisomerase -
  QML80_RS11305 (CIRMBP1228_02289) - 2232698..2233117 (-) 420 WP_281958671.1 hypothetical protein -
  QML80_RS11310 (CIRMBP1228_02290) - 2233156..2233881 (-) 726 WP_281958672.1 class A sortase -
  QML80_RS11315 (CIRMBP1228_02291) - 2233890..2234663 (-) 774 WP_281958673.1 thermonuclease family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17610.38 Da        Isoelectric Point: 4.9229

>NTDB_id=1155092 QML80_RS11295 WP_047334078.1 2229609..2230079(-) (ssb) [Enterococcus cecorum isolate CIRMBP-1228]
MINNVTLVGRLTRDADLRYTASGVAVATFNLAVNRNYSNQNGERETDFINCVIWRKPAENLANYTRKGSLIGLTGRLQTR
NYENQQGQRVYVTEVIVESFQMLESREVTENRKQSANQTNQASNPTNTTSQPTQPFMDYSSFGGQSVEISEDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1155092 QML80_RS11295 WP_047334078.1 2229609..2230079(-) (ssb) [Enterococcus cecorum isolate CIRMBP-1228]
ATGATTAACAACGTCACATTAGTAGGTAGATTAACAAGAGATGCAGACTTACGATATACTGCATCAGGAGTCGCAGTAGC
AACATTTAATTTAGCGGTTAATCGTAACTATAGCAATCAAAATGGCGAAAGAGAAACCGACTTTATCAATTGTGTGATTT
GGCGAAAACCTGCGGAAAATTTAGCAAATTATACAAGAAAAGGTAGCTTGATTGGTTTAACAGGTAGATTGCAAACAAGG
AATTATGAAAATCAACAAGGACAACGTGTGTATGTGACTGAAGTAATTGTAGAGAGTTTTCAGATGTTAGAGTCCAGGGA
AGTCACTGAAAATCGTAAACAGTCAGCAAACCAAACTAATCAAGCATCTAATCCAACTAATACTACATCTCAACCAACAC
AACCATTTATGGATTATTCATCCTTTGGTGGCCAAAGTGTAGAAATTAGTGAAGATGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.647
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.163

100

0.564
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.847

75.641

0.385
  ssbB/cilA Streptococcus mitis NCTC 12261

50.847

75.641

0.385
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.066

87.821

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

50

75.641

0.378
  ssbB/cilA Streptococcus pneumoniae D39

50

75.641

0.378
  ssbB/cilA Streptococcus pneumoniae R6

50

75.641

0.378
  ssbB/cilA Streptococcus mitis SK321

50

75.641

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378

Multiple sequence alignment