Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OOL07_RS00470 Genome accession   NZ_OX241534
Coordinates   84485..85699 (-) Length   404 a.a.
NCBI ID   WP_264694102.1    Uniprot ID   -
Organism   Candidatus Nitrosacidococcus sp. I8 isolate NURINAE_1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 79485..90699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL07_RS00435 (NURINAE_00087) nadA 80195..81304 (+) 1110 WP_264694088.1 quinolinate synthase NadA -
  OOL07_RS00440 (NURINAE_00088) - 81325..81555 (+) 231 WP_264694090.1 zinc-finger domain-containing protein -
  OOL07_RS00445 (NURINAE_00089) - 81566..81766 (-) 201 WP_264694092.1 DUF2905 domain-containing protein -
  OOL07_RS00450 (NURINAE_00090) - 81800..82762 (+) 963 WP_264694094.1 Nudix family hydrolase -
  OOL07_RS00455 (NURINAE_00091) yacG 82759..82971 (-) 213 WP_264694096.1 DNA gyrase inhibitor YacG -
  OOL07_RS00460 (NURINAE_00092) coaE 82978..83631 (-) 654 WP_264694098.1 dephospho-CoA kinase -
  OOL07_RS00465 (NURINAE_00093) pilD 83588..84457 (-) 870 WP_264694100.1 prepilin peptidase Machinery gene
  OOL07_RS00470 (NURINAE_00094) pilC 84485..85699 (-) 1215 WP_264694102.1 type II secretion system F family protein Machinery gene
  OOL07_RS00475 (NURINAE_00095) pilB 85707..87413 (-) 1707 WP_264694104.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OOL07_RS09240 lptM 87537..87671 (+) 135 WP_413774115.1 LPS translocon maturation chaperone LptM -
  OOL07_RS00480 (NURINAE_00096) lysA 87680..88930 (+) 1251 WP_264694106.1 diaminopimelate decarboxylase -
  OOL07_RS00485 (NURINAE_00097) - 88954..89622 (+) 669 WP_264694110.1 O-methyltransferase -
  OOL07_RS00490 (NURINAE_00098) dapF 89629..90471 (+) 843 WP_264694113.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44601.53 Da        Isoelectric Point: 9.9728

>NTDB_id=1154281 OOL07_RS00470 WP_264694102.1 84485..85699(-) (pilC) [Candidatus Nitrosacidococcus sp. I8 isolate NURINAE_1]
MAEAKNSTFIWEGNNRQGQAIKGEIEGKNISLIKANLRRQGVTSLKIKKKPAPLFSFSKNKISPKEIALFSRQVATMMSA
GIPMIQSFDLIGRSHENEAMKRLAKNIREEVEGGSTFAEALQKHPKHFDNLFCNLVHAGEQSGTLETLLDKIATYKERTE
SVKGKIKKALFYPLAIMVVAFIITAILLIFVIPKFKDLFTGFGADLPAITLFVMNLSEFFKAWWWAIFSGIGVTIYTLIT
AKNRSKSVEYLFDKMILRIPVIGSALNKAIISRYARTLSTMFAAGVPLVEALKSVANASGNMIYTEGILKIRDEVSTGSR
LYIAMRDSGLFPDMVVQMVSIGEEAGSISQMLTKIADSYEEEVNNTVDSLSSLMEPVIMAILGVIIGGLVIAMYLPIFKM
GSVI

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=1154281 OOL07_RS00470 WP_264694102.1 84485..85699(-) (pilC) [Candidatus Nitrosacidococcus sp. I8 isolate NURINAE_1]
ATGGCTGAAGCAAAAAATAGTACTTTTATTTGGGAAGGAAATAATCGTCAGGGTCAAGCAATAAAAGGAGAAATAGAAGG
TAAAAATATTAGTTTAATCAAAGCTAACTTACGCCGCCAAGGGGTTACATCTCTTAAAATCAAAAAAAAGCCTGCTCCTC
TTTTTAGCTTTTCTAAGAATAAAATTTCTCCAAAAGAAATTGCTCTATTTAGTCGCCAAGTAGCTACTATGATGTCTGCA
GGTATTCCTATGATTCAGTCCTTCGATTTAATTGGACGTAGTCATGAAAATGAAGCAATGAAAAGGCTTGCTAAAAACAT
AAGAGAAGAAGTAGAAGGTGGTAGTACATTTGCCGAAGCATTACAAAAACATCCAAAACATTTCGATAATCTATTTTGTA
ACTTAGTTCATGCTGGGGAACAATCCGGTACCCTAGAAACTCTACTAGATAAAATTGCAACTTACAAAGAAAGAACAGAA
TCGGTTAAAGGAAAAATAAAAAAAGCCTTATTTTATCCTCTCGCTATTATGGTGGTTGCTTTTATCATTACTGCAATTTT
ACTTATTTTTGTGATTCCTAAATTTAAAGATCTATTTACCGGTTTTGGAGCAGATTTACCGGCAATTACTTTATTTGTTA
TGAATCTCTCTGAATTTTTTAAAGCCTGGTGGTGGGCAATTTTCTCTGGGATAGGAGTCACTATTTATACGCTGATTACC
GCAAAAAATCGTTCTAAGAGCGTAGAGTATCTTTTCGATAAGATGATACTTAGAATACCAGTCATTGGATCGGCATTGAA
TAAAGCCATTATTTCTAGATACGCTCGTACTCTTTCTACCATGTTTGCTGCTGGCGTTCCTCTAGTTGAAGCATTAAAAT
CTGTGGCAAATGCTTCAGGTAATATGATTTATACTGAAGGAATTTTAAAAATTCGAGATGAAGTATCTACTGGTAGTCGT
CTATATATAGCAATGCGTGATAGCGGGCTTTTCCCTGACATGGTTGTGCAGATGGTATCTATTGGTGAAGAGGCAGGATC
TATCAGCCAAATGCTTACGAAAATAGCAGATTCTTATGAAGAGGAGGTCAATAATACGGTAGATAGTTTAAGTAGTCTTA
TGGAGCCTGTGATTATGGCTATACTTGGAGTTATTATTGGTGGTTTAGTCATTGCCATGTATCTTCCTATCTTTAAAATG
GGATCGGTCATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-396)

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.5

99.01

0.54
  pilC Legionella pneumophila strain ERS1305867

53.96

100

0.54
  pilC Acinetobacter baumannii D1279779

52.764

98.515

0.52
  pilC Acinetobacter baylyi ADP1

51.385

98.267

0.505
  pilG Neisseria meningitidis 44/76-A

42.394

99.257

0.421
  pilG Neisseria gonorrhoeae MS11

42.145

99.257

0.418
  pilC Vibrio campbellii strain DS40M4

40.15

99.257

0.399
  pilC Vibrio cholerae strain A1552

37.879

98.02

0.371

Multiple sequence alignment