Detailed information NTG1154280

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OOL07_RS00465
• Genome accession: NZ_OX241534
• Coordinates: 83588..84457 (-)
• Length: 289 a.a.
• NCBI ID: WP_264694100.1
• Uniprot ID: -
• Organism: Candidatus Nitrosacidococcus sp. I8 isolate NURINAE_1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 78588..89457

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OOL07_RS00435 (NURINAE_00087)	nadA	80195..81304 (+)	1110	WP_264694088.1	quinolinate synthase NadA	-
OOL07_RS00440 (NURINAE_00088)	-	81325..81555 (+)	231	WP_264694090.1	zinc-finger domain-containing protein	-
OOL07_RS00445 (NURINAE_00089)	-	81566..81766 (-)	201	WP_264694092.1	DUF2905 domain-containing protein	-
OOL07_RS00450 (NURINAE_00090)	-	81800..82762 (+)	963	WP_264694094.1	Nudix family hydrolase	-
OOL07_RS00455 (NURINAE_00091)	yacG	82759..82971 (-)	213	WP_264694096.1	DNA gyrase inhibitor YacG	-
OOL07_RS00460 (NURINAE_00092)	coaE	82978..83631 (-)	654	WP_264694098.1	dephospho-CoA kinase	-
OOL07_RS00465 (NURINAE_00093)	pilD	83588..84457 (-)	870	WP_264694100.1	prepilin peptidase	Machinery gene
OOL07_RS00470 (NURINAE_00094)	pilC	84485..85699 (-)	1215	WP_264694102.1	type II secretion system F family protein	Machinery gene
OOL07_RS00475 (NURINAE_00095)	pilB	85707..87413 (-)	1707	WP_264694104.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OOL07_RS09240	lptM	87537..87671 (+)	135	WP_413774115.1	LPS translocon maturation chaperone LptM	-
OOL07_RS00480 (NURINAE_00096)	lysA	87680..88930 (+)	1251	WP_264694106.1	diaminopimelate decarboxylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 33106.14 Da
• Isoelectric Point: 6.8933

>NTDB_id=1154280 OOL07_RS00465 WP_264694100.1 83588..84457(-) (pilD) [Candidatus Nitrosacidococcus sp. I8 isolate NURINAE_1]
MEFIYFFDDHPGSFFTSSFIIGLMIGSFLNVVIYRLPLMIERTWKYQCAELQGNPLPKSESFNLWLPYSHCPHCKKTIYP
WENIPILSYLVLRGHCSRCKTNISPRYPLVELLTGMFSLVVALHFGITWEGLAALTLTYALIVLSLIDFDHQILPDDITL
PFLWLGLILSLFDLFTDAHSSIIGAVAGYLFFWLIYQLFRILVRKEAMGYGDFKLLSMLGAWLGWKMLPMIILFSSFGGA
IFGSLWLYFTKQTKETPLSFGPYIATSGWIALMWGDDINHLYLSLSKLG

Nucleotide

• Length: 870 bp

>NTDB_id=1154280 OOL07_RS00465 WP_264694100.1 83588..84457(-) (pilD) [Candidatus Nitrosacidococcus sp. I8 isolate NURINAE_1]
ATGGAATTTATATATTTTTTTGACGATCATCCAGGTTCGTTTTTCACTTCATCATTCATAATAGGTTTAATGATAGGTAG
CTTCTTAAATGTAGTTATTTATCGCTTACCTTTGATGATAGAGAGAACCTGGAAATACCAATGTGCAGAATTACAAGGTA
ATCCATTGCCGAAATCTGAATCATTTAACTTATGGCTTCCCTACTCCCATTGTCCTCATTGTAAAAAAACTATTTACCCT
TGGGAAAATATCCCCATATTGAGCTATCTTGTACTTCGAGGGCATTGTAGCCGCTGTAAAACTAATATTTCCCCCCGTTA
CCCTCTAGTAGAGCTCCTTACAGGGATGTTCTCCCTCGTGGTTGCTCTGCATTTTGGTATCACTTGGGAAGGGTTAGCTG
CATTAACGTTAACTTATGCGCTAATTGTACTTAGCTTAATTGATTTTGATCATCAAATTTTGCCAGATGATATTACCTTA
CCCTTTCTCTGGTTAGGGCTTATTCTAAGTCTATTTGATTTATTTACTGATGCTCATAGTAGTATTATAGGAGCCGTGGC
TGGATATCTTTTCTTTTGGCTTATTTACCAATTGTTCCGCATTTTAGTCCGTAAAGAAGCTATGGGATATGGTGATTTTA
AGCTTTTAAGTATGTTAGGAGCATGGCTTGGATGGAAGATGCTCCCGATGATTATTCTATTTTCTTCTTTTGGAGGGGCT
ATATTCGGAAGTTTATGGCTTTATTTTACTAAGCAAACCAAAGAAACTCCCCTCTCTTTTGGTCCTTATATTGCTACTTC
AGGATGGATAGCCTTAATGTGGGGAGATGATATTAATCATCTTTACTTGTCCCTCTCTAAACTTGGTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.129	99.308	0.488
pilD	Acinetobacter baumannii D1279779	46.316	98.616	0.457
pilD	Acinetobacter nosocomialis M2	46.316	98.616	0.457
pilD	Vibrio campbellii strain DS40M4	46.975	97.232	0.457
pilD	Neisseria gonorrhoeae MS11	47.126	90.311	0.426