Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   NB068_RS06055 Genome accession   NZ_OW969598
Coordinates   1235134..1236366 (+) Length   410 a.a.
NCBI ID   WP_250314385.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1230134..1241366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS06040 fabI 1231163..1231948 (-) 786 WP_002223367.1 enoyl-ACP reductase FabI -
  NB068_RS06045 dapD 1232103..1232924 (-) 822 WP_107862922.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  NB068_RS06050 pgi 1233133..1234776 (-) 1644 WP_250314384.1 glucose-6-phosphate isomerase -
  NB068_RS06055 pilG 1235134..1236366 (+) 1233 WP_250314385.1 type II secretion system F family protein Machinery gene
  NB068_RS06060 pilD 1236440..1237300 (+) 861 WP_250314386.1 A24 family peptidase Machinery gene
  NB068_RS06065 coaE 1237302..1237934 (+) 633 WP_250314387.1 dephospho-CoA kinase -
  NB068_RS06070 yacG 1237927..1238136 (+) 210 WP_250314388.1 DNA gyrase inhibitor YacG -
  NB068_RS06075 pilF 1238229..1239905 (-) 1677 WP_250314389.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NB068_RS06080 - 1239902..1240174 (-) 273 WP_250314390.1 hypothetical protein -
  NB068_RS06090 - 1240437..1240883 (-) 447 WP_250314391.1 DUF441 domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45367.34 Da        Isoelectric Point: 9.8101

>NTDB_id=1153541 NB068_RS06055 WP_250314385.1 1235134..1236366(+) (pilG) [Neisseria sp. Marseille-Q6792]
MAKNGGLSLFSKKEKRFIFEGRHSASDKIVNGEVSAFTEEEARKKLAKRGIRPLQISRVKTTSKRKITQEDITVFTRQLA
TMMKAGLPLMQAFEIVARGHANPSMTEMLVEIRSEVEQGTTLSRAFSRYPKYFDRFYCNLVAAGETGGVLESLLDKLAVY
KEKTQAIRKKVKTALTYPISVIAVAIGLVFVMMIFVLPAFKEVYSNMGAELPALTQTVMDISEFFVAYGWIILIALGCSI
YGFLKLKERSPKIQRRMDAFLLRMPIFGNIVQKATIARWGRTTATLFAAGVPLVDVLNSTAGAAGNLIYEEATQEIRTRV
IQGLSMTSGMRATELFPNMMVQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVVLGLIIGTLLVAMYL
PLFNLGNVVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1153541 NB068_RS06055 WP_250314385.1 1235134..1236366(+) (pilG) [Neisseria sp. Marseille-Q6792]
ATGGCTAAAAACGGAGGACTTTCTTTATTTTCAAAGAAAGAAAAACGCTTTATCTTTGAAGGCAGGCATTCTGCCTCCGA
CAAAATAGTCAACGGTGAAGTATCTGCGTTTACCGAAGAAGAGGCACGCAAGAAACTGGCAAAACGCGGCATCCGCCCGT
TACAGATTAGCCGTGTAAAAACAACTTCAAAACGCAAAATTACACAAGAAGACATTACCGTCTTCACACGCCAGTTGGCA
ACTATGATGAAAGCGGGCCTGCCGCTGATGCAGGCATTTGAGATTGTGGCGCGCGGTCATGCCAACCCGTCCATGACGGA
AATGTTGGTGGAAATCCGTAGTGAAGTAGAACAGGGCACCACCCTGAGTCGCGCGTTCTCACGCTATCCCAAATACTTTG
ACCGCTTCTACTGCAACCTGGTTGCGGCGGGCGAAACGGGCGGCGTGTTAGAAAGCCTGTTGGACAAATTGGCAGTTTAC
AAGGAAAAAACCCAGGCCATCCGTAAAAAAGTAAAAACTGCGCTGACTTATCCGATATCGGTAATCGCCGTCGCCATCGG
CTTGGTATTTGTGATGATGATCTTCGTACTGCCGGCGTTTAAAGAAGTTTATTCCAATATGGGTGCCGAACTGCCCGCGC
TGACTCAGACCGTCATGGATATTTCCGAGTTTTTTGTCGCATACGGCTGGATAATTCTGATTGCGCTTGGCTGCTCGATA
TACGGCTTCCTCAAACTTAAAGAGCGTTCACCCAAAATCCAACGCCGTATGGATGCCTTTCTGCTACGTATGCCTATTTT
TGGCAACATTGTACAAAAAGCAACTATTGCACGCTGGGGCAGGACGACGGCAACACTGTTTGCAGCAGGCGTACCGCTGG
TCGATGTATTGAATTCGACTGCAGGTGCGGCGGGCAACCTGATTTACGAAGAAGCCACCCAAGAAATCCGTACTCGAGTA
ATTCAAGGTCTGTCCATGACCTCAGGAATGCGTGCGACGGAACTTTTCCCCAATATGATGGTACAGATGTCCTCCATCGG
CGAGGAATCGGGTTCTTTAGACGACATGCTCAACAAAGCTGCCGAGTTTTATGAAGACGAGGTGGATAATGCGGTCGGCC
GACTGTCCGCCATGATGGAACCGATTATCATCGTGGTTTTGGGTCTGATCATCGGTACGCTTCTGGTAGCGATGTATCTG
CCGCTGTTCAACTTGGGTAACGTGGTCGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

90.954

99.756

0.907
  pilG Neisseria meningitidis 44/76-A

90.22

99.756

0.9
  pilC Acinetobacter baumannii D1279779

47.99

97.073

0.466
  pilC Acinetobacter baylyi ADP1

46.482

97.073

0.451
  pilC Legionella pneumophila strain ERS1305867

46.096

96.829

0.446
  pilC Pseudomonas stutzeri DSM 10701

45.387

97.805

0.444
  pilC Vibrio cholerae strain A1552

41.935

98.293

0.412
  pilC Vibrio campbellii strain DS40M4

39.312

99.268

0.39

Multiple sequence alignment