Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NBW44_RS06920 Genome accession   NZ_OW724079
Coordinates   1360862..1362118 (-) Length   418 a.a.
NCBI ID   WP_250307737.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1355862..1367118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS06895 - 1356037..1356720 (+) 684 WP_250307733.1 hypothetical protein -
  NBW44_RS06900 - 1356765..1357481 (-) 717 WP_061863664.1 YebC/PmpR family DNA-binding transcriptional regulator -
  NBW44_RS06905 - 1357579..1358949 (-) 1371 WP_250307734.1 MATE family efflux transporter -
  NBW44_RS06910 - 1359058..1359612 (+) 555 WP_250307735.1 GNAT family N-acetyltransferase -
  NBW44_RS06915 recA 1359657..1360808 (-) 1152 WP_250307736.1 recombinase RecA Machinery gene
  NBW44_RS06920 cinA 1360862..1362118 (-) 1257 WP_250307737.1 competence/damage-inducible protein A Machinery gene
  NBW44_RS06925 - 1362249..1363289 (-) 1041 WP_250307738.1 LCP family protein -
  NBW44_RS06930 - 1363294..1363815 (-) 522 WP_075565496.1 GNAT family N-acetyltransferase -
  NBW44_RS06935 tsaE 1363805..1364248 (-) 444 WP_075565494.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  NBW44_RS06940 - 1364340..1365761 (-) 1422 WP_250307739.1 NCS2 family permease -
  NBW44_RS06945 - 1365959..1366771 (+) 813 WP_250307740.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44833.29 Da        Isoelectric Point: 4.6370

>NTDB_id=1152615 NBW44_RS06920 WP_250307737.1 1360862..1362118(-) (cinA) [Streptococcus sp. Marseille-Q3533]
MKAEIIAVGTEILTGQILNTNAQFLSEKLAEIGVDVYIQTAVGDNEARLLSVLEIARERSGLVILTGGLGPTEDDLTKQT
VAKFLGKNLVFDAQAQTKLDDFFAQRPDYARTPNNERQAQIIQGATPLANETGLAVGGMIEVEGVTYVVLPGPPSELKPM
VLNELLPRLMTGAKLYSRVLRFFGIGESQLVTILADLIEQQTDPTLAPYAKTGEVTLRLSTKAKSKEEADAALNTLEEQI
LSRDTFEGTSLRELCYGYGDETSLASLVVEELKKRQISITAAESLTAGLFQASLADFSGVSAIFKGGFVTYSLEEKAKML
DIPQAELEIHGVVSAYTAEKMAEQAREKTASDIGISLTGVAGPESLEGHPAGTVFIGLSQASGTEVIRVNIGGRSRADVR
KIAVMHAFNLVLKALLSK

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1152615 NBW44_RS06920 WP_250307737.1 1360862..1362118(-) (cinA) [Streptococcus sp. Marseille-Q3533]
ATGAAAGCGGAAATTATTGCTGTTGGGACTGAGATTTTGACAGGACAAATTCTTAATACTAATGCTCAGTTTTTATCTGA
AAAACTAGCTGAAATAGGTGTGGATGTCTATATTCAAACTGCTGTTGGAGATAACGAGGCTCGTCTTTTGTCCGTGCTAG
AGATAGCTCGAGAACGGAGTGGGTTAGTGATACTAACAGGAGGATTGGGACCTACAGAAGACGACTTGACCAAACAAACA
GTGGCCAAGTTCTTAGGAAAAAATTTAGTTTTTGATGCACAAGCACAGACGAAATTAGATGACTTTTTTGCCCAGAGACC
TGATTATGCCCGGACTCCAAATAATGAGCGTCAAGCTCAGATTATTCAAGGAGCAACCCCTCTAGCCAATGAGACGGGCT
TAGCAGTGGGTGGCATGATTGAGGTGGAAGGGGTAACTTATGTTGTTTTACCTGGACCACCTAGTGAATTGAAACCGATG
GTTCTAAATGAGTTGTTGCCAAGATTGATGACAGGCGCTAAATTATACTCAAGGGTTCTGCGATTCTTTGGGATAGGAGA
GAGTCAGCTAGTCACTATCTTAGCAGATTTAATCGAACAACAAACGGATCCAACCTTGGCGCCCTATGCAAAAACTGGGG
AAGTTACCTTGCGTTTGTCGACTAAGGCTAAGAGCAAAGAGGAGGCTGATGCGGCCTTGAATACTTTAGAGGAGCAGATC
TTAAGTCGAGATACTTTCGAAGGTACTTCCCTTCGAGAGCTTTGCTATGGCTATGGGGATGAGACAAGTCTAGCTAGTCT
TGTAGTAGAAGAATTAAAAAAGAGACAAATAAGTATTACCGCTGCAGAAAGTTTGACAGCAGGTCTCTTTCAAGCAAGTT
TAGCAGATTTTTCAGGAGTATCTGCTATCTTTAAAGGTGGTTTTGTGACTTATAGTCTGGAAGAAAAGGCTAAAATGCTA
GATATTCCACAAGCAGAATTAGAAATCCATGGTGTTGTTTCAGCCTACACAGCAGAGAAAATGGCTGAGCAGGCACGAGA
AAAAACTGCATCCGATATTGGGATTAGTTTGACAGGGGTGGCAGGACCTGAAAGTTTAGAAGGGCATCCGGCAGGAACAG
TTTTTATAGGACTGTCTCAAGCATCGGGCACAGAAGTCATACGTGTCAATATAGGAGGACGGAGTCGAGCAGATGTTCGT
AAAATTGCTGTTATGCATGCCTTTAACTTAGTTCTCAAAGCTTTATTAAGTAAGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(262-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

84.173

99.761

0.84
  cinA Streptococcus mitis NCTC 12261

83.213

99.761

0.83
  cinA Streptococcus pneumoniae TIGR4

82.734

99.761

0.825
  cinA Streptococcus pneumoniae Rx1

82.494

99.761

0.823
  cinA Streptococcus pneumoniae R6

82.494

99.761

0.823
  cinA Streptococcus pneumoniae D39

82.254

99.761

0.821
  cinA Streptococcus mutans UA159

70.096

100

0.701
  cinA Streptococcus suis isolate S10

53.846

99.522

0.536
  cinA Bacillus subtilis subsp. subtilis str. 168

47.981

100

0.483

Multiple sequence alignment