Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   NBW44_RS04165 Genome accession   NZ_OW724079
Coordinates   828913..829554 (-) Length   213 a.a.
NCBI ID   WP_250307320.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 823913..834554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS04145 - 824555..824755 (-) 201 WP_004253309.1 F0F1 ATP synthase subunit C -
  NBW44_RS04150 - 824984..825295 (-) 312 WP_250307317.1 CHY zinc finger protein -
  NBW44_RS04155 - 825310..826596 (-) 1287 WP_250307318.1 U32 family peptidase -
  NBW44_RS04160 comEC/celB 826719..828929 (-) 2211 WP_250307319.1 ComEC/Rec2 family competence protein Machinery gene
  NBW44_RS04165 comEA/celA/cilE 828913..829554 (-) 642 WP_250307320.1 helix-hairpin-helix domain-containing protein Machinery gene
  NBW44_RS04170 - 829620..830189 (-) 570 WP_250307321.1 GNAT family N-acetyltransferase -
  NBW44_RS04175 ald 830396..831508 (+) 1113 WP_250307322.1 alanine dehydrogenase -
  NBW44_RS04180 - 831549..832535 (-) 987 WP_250307323.1 PhoH family protein -
  NBW44_RS04185 - 832620..832835 (-) 216 WP_075567726.1 YozE family protein -
  NBW44_RS04190 cvfB 832844..833698 (-) 855 WP_250307325.1 RNA-binding virulence regulatory protein CvfB -
  NBW44_RS04195 frr 833759..834316 (-) 558 WP_006148672.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23319.40 Da        Isoelectric Point: 5.2420

>NTDB_id=1152598 NBW44_RS04165 WP_250307320.1 828913..829554(-) (comEA/celA/cilE) [Streptococcus sp. Marseille-Q3533]
MEELIEKIKEYKIIVICASLGMVLGGFFLLKPVSQTPTKESNLQTEVTTVSKDSTDEKEDKNQKEEAVEQDLITVDVKGA
VKSPGIYDLPVGSRINDAVQKAGGLTDNADSKSINLAQRISDEALLYVPTKEEATSQEAHSNASNTKENKKVNLNKASLE
ELKQVKGLGAKRAQDIIDHRESNGKFKSVDELKKVSGIGAKTIEKLKEYVTVD

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1152598 NBW44_RS04165 WP_250307320.1 828913..829554(-) (comEA/celA/cilE) [Streptococcus sp. Marseille-Q3533]
ATGGAAGAACTTATTGAGAAAATCAAAGAATATAAAATCATTGTCATCTGTGCTAGTTTGGGCATGGTCTTAGGCGGATT
TTTCCTCCTAAAGCCAGTCTCTCAAACACCGACTAAGGAAAGCAATTTGCAAACAGAAGTTACAACTGTTTCAAAGGATT
CGACGGATGAAAAGGAAGATAAAAATCAGAAGGAAGAAGCGGTAGAGCAAGATCTGATTACTGTTGATGTAAAAGGTGCG
GTCAAATCACCTGGAATCTATGATTTGCCAGTTGGAAGTCGTATCAACGATGCTGTCCAAAAAGCTGGTGGATTAACAGA
TAATGCTGATAGTAAGTCTATCAATCTTGCCCAGAGAATTAGTGACGAAGCACTTCTTTATGTTCCGACTAAGGAAGAAG
CTACCAGTCAAGAGGCGCATTCAAATGCTTCCAACACCAAAGAAAATAAGAAAGTCAATCTTAATAAAGCCAGTTTAGAG
GAGCTGAAACAAGTCAAGGGGTTGGGAGCCAAACGTGCTCAGGATATCATCGACCATCGTGAGTCCAACGGTAAGTTTAA
GTCAGTTGATGAGCTCAAAAAGGTTTCTGGTATTGGTGCAAAAACGATAGAAAAGTTAAAAGAGTATGTCACAGTGGATT
AG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(149-211)

SLBB domain (SLBB)

(75-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

79.167

100

0.803
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

78.704

100

0.798
  comEA/celA/cilE Streptococcus mitis SK321

77.315

100

0.784
  comEA/celA/cilE Streptococcus pneumoniae R6

76.852

100

0.779
  comEA/celA/cilE Streptococcus pneumoniae Rx1

76.852

100

0.779
  comEA/celA/cilE Streptococcus pneumoniae D39

76.852

100

0.779
  comEA Streptococcus thermophilus LMD-9

38.428

100

0.413
  comEA Lactococcus lactis subsp. cremoris KW2

37.611

100

0.399
  comEA Staphylococcus aureus N315

35

100

0.362

Multiple sequence alignment