Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   DYY95_RS13195 Genome accession   NZ_LT996891
Coordinates   2555556..2555867 (+) Length   103 a.a.
NCBI ID   WP_000472256.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 24117-WT     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2550556..2560867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY95_RS13170 - 2550611..2550940 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DYY95_RS13175 - 2550937..2551560 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  DYY95_RS13180 - 2551855..2553501 (+) 1647 WP_000277718.1 IS1182 family transposase -
  DYY95_RS13185 comGA 2553526..2554500 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DYY95_RS13190 comGB 2554472..2555542 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  DYY95_RS13195 comGC 2555556..2555867 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DYY95_RS13200 comGD 2555845..2556291 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  DYY95_RS13205 comGE 2556278..2556577 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  DYY95_RS13210 comGF 2556495..2556992 (+) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  DYY95_RS13215 - 2557089..2557235 (+) 147 WP_001789879.1 hypothetical protein -
  DYY95_RS13220 - 2557225..2557749 (+) 525 WP_001015123.1 shikimate kinase -
  DYY95_RS13225 gcvT 2557908..2558999 (+) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  DYY95_RS13230 gcvPA 2559019..2560365 (+) 1347 WP_000019689.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11315.36 Da        Isoelectric Point: 8.5268

>NTDB_id=1150540 DYY95_RS13195 WP_000472256.1 2555556..2555867(+) (comGC) [Staphylococcus aureus isolate 24117-WT]
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1150540 DYY95_RS13195 WP_000472256.1 2555556..2555867(+) (comGC) [Staphylococcus aureus isolate 24117-WT]
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

100

100

1
  comGC Staphylococcus aureus N315

100

100

1
  comGC/cglC Streptococcus pneumoniae TIGR4

46.078

99.029

0.456
  comGC/cglC Streptococcus pneumoniae Rx1

46.078

99.029

0.456
  comGC/cglC Streptococcus pneumoniae D39

46.078

99.029

0.456
  comGC/cglC Streptococcus pneumoniae R6

46.078

99.029

0.456
  comGC/cglC Streptococcus mitis SK321

51.163

83.495

0.427
  comGC/cglC Streptococcus mitis NCTC 12261

51.163

83.495

0.427
  comYC Streptococcus gordonii str. Challis substr. CH1

42.857

95.146

0.408
  comYC Streptococcus suis isolate S10

50

75.728

0.379
  comGC Bacillus subtilis subsp. subtilis str. 168

41.758

88.35

0.369
  comGC Lactococcus lactis subsp. cremoris KW2

46.341

79.612

0.369

Multiple sequence alignment