Detailed information NTG1149552

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: DXE56_RS05560
• Genome accession: NZ_LT992464
• Coordinates: 1009920..1010231 (+)
• Length: 103 a.a.
• NCBI ID: WP_000472256.1
• Uniprot ID: -
• Organism: Staphylococcus aureus isolate 3_LA_115
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1004920..1015231

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DXE56_RS05530	-	1005703..1005906 (+)	204	WP_000087559.1	YqgQ family protein	-
DXE56_RS05535	-	1005903..1006889 (+)	987	WP_000161315.1	ROK family glucokinase	-
DXE56_RS05540	-	1006889..1007218 (+)	330	WP_001018871.1	MTH1187 family thiamine-binding protein	-
DXE56_RS05545	-	1007215..1007838 (+)	624	WP_001223008.1	MBL fold metallo-hydrolase	-
DXE56_RS05550	comGA	1007890..1008864 (+)	975	WP_000697220.1	competence type IV pilus ATPase ComGA	Machinery gene
DXE56_RS05555	comGB	1008836..1009906 (+)	1071	WP_000776425.1	competence type IV pilus assembly protein ComGB	Machinery gene
DXE56_RS05560	comGC	1009920..1010231 (+)	312	WP_000472256.1	competence type IV pilus major pilin ComGC	Machinery gene
DXE56_RS05565	comGD	1010209..1010655 (+)	447	WP_001796473.1	competence type IV pilus minor pilin ComGD	Machinery gene
DXE56_RS05570	comGE	1010642..1010941 (+)	300	WP_000844413.1	hypothetical protein	Machinery gene
DXE56_RS05575	comGF	1010859..1011356 (+)	498	WP_001825340.1	competence type IV pilus minor pilin ComGF	Machinery gene
DXE56_RS05580	-	1011453..1011599 (+)	147	WP_001789879.1	hypothetical protein	-
DXE56_RS05585	-	1011589..1012113 (+)	525	WP_001015120.1	shikimate kinase	-
DXE56_RS05590	gcvT	1012272..1013363 (+)	1092	WP_000093349.1	glycine cleavage system aminomethyltransferase GcvT	-
DXE56_RS05595	gcvPA	1013383..1014729 (+)	1347	WP_031795510.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-

Sequence

Protein

• Length: 103 a.a.
• Molecular weight: 11315.36 Da
• Isoelectric Point: 8.5268

>NTDB_id=1149552 DXE56_RS05560 WP_000472256.1 1009920..1010231(+) (comGC) [Staphylococcus aureus isolate 3_LA_115]
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN

Nucleotide

• Length: 312 bp

>NTDB_id=1149552 DXE56_RS05560 WP_000472256.1 1009920..1010231(+) (comGC) [Staphylococcus aureus isolate 3_LA_115]
ATGTTTAAATTTCTAAAAAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTATTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (6-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Staphylococcus aureus MW2	100	100	1
comGC	Staphylococcus aureus N315	100	100	1
comGC/cglC	Streptococcus pneumoniae TIGR4	46.078	99.029	0.456
comGC/cglC	Streptococcus pneumoniae Rx1	46.078	99.029	0.456
comGC/cglC	Streptococcus pneumoniae D39	46.078	99.029	0.456
comGC/cglC	Streptococcus pneumoniae R6	46.078	99.029	0.456
comGC/cglC	Streptococcus mitis SK321	51.163	83.495	0.427
comGC/cglC	Streptococcus mitis NCTC 12261	51.163	83.495	0.427
comYC	Streptococcus gordonii str. Challis substr. CH1	42.857	95.146	0.408
comYC	Streptococcus suis isolate S10	50	75.728	0.379
comGC	Bacillus subtilis subsp. subtilis str. 168	41.758	88.35	0.369
comGC	Lactococcus lactis subsp. cremoris KW2	46.341	79.612	0.369