Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C6H44_RS18465 Genome accession   NZ_LT963391
Coordinates   3890089..3891306 (+) Length   405 a.a.
NCBI ID   WP_044320765.1    Uniprot ID   A0A9X0H3X1
Organism   Pseudomonas syringae pv. cerasicola isolate CFBP6109     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3885089..3896306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H44_RS18440 (CFBP6109_03678) - 3885125..3885712 (-) 588 WP_162497316.1 DUF433 domain-containing protein -
  C6H44_RS18445 - 3885981..3886288 (+) 308 Protein_3490 DUF1523 family protein -
  C6H44_RS18450 (CFBP6109_03679) - 3886514..3886948 (-) 435 WP_080393789.1 pilin -
  C6H44_RS18455 (CFBP6109_03680) - 3887114..3888091 (+) 978 WP_032701292.1 IS5 family transposase -
  C6H44_RS18460 (CFBP6109_03681) pilB 3888392..3890086 (+) 1695 WP_044320764.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C6H44_RS18465 (CFBP6109_03682) pilC 3890089..3891306 (+) 1218 WP_044320765.1 type II secretion system F family protein Machinery gene
  C6H44_RS18470 (CFBP6109_03683) pilD 3891308..3892180 (+) 873 WP_010216946.1 prepilin peptidase Machinery gene
  C6H44_RS18475 (CFBP6109_03684) coaE 3892177..3892800 (+) 624 WP_057460426.1 dephospho-CoA kinase -
  C6H44_RS18480 (CFBP6109_03685) yacG 3892797..3893006 (+) 210 WP_002552020.1 DNA gyrase inhibitor YacG -
  C6H44_RS18485 (CFBP6109_03687) - 3893204..3893476 (-) 273 Protein_3498 hypothetical protein -
  C6H44_RS18490 (CFBP6109_03688) - 3893561..3894190 (+) 630 WP_002553210.1 DUF1780 domain-containing protein -
  C6H44_RS18495 (CFBP6109_03689) - 3894187..3894720 (+) 534 WP_002553209.1 MOSC domain-containing protein -
  C6H44_RS18505 (CFBP6109_03690) - 3894938..3896236 (+) 1299 WP_044321605.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44197.11 Da        Isoelectric Point: 10.1809

>NTDB_id=1148761 C6H44_RS18465 WP_044320765.1 3890089..3891306(+) (pilC) [Pseudomonas syringae pv. cerasicola isolate CFBP6109]
MASKAVKVSIYTWEGLDKKGGKLSGELSGHNPALIKAQLRKQGVNPTKVRKKSISIFGKGKKIKPLDIAFFSRQMATMMK
AGVPLLQSFDIISEGAENPNMRTLVVSLKQEVSAGNSFATALRQKPEHFDELFCNLVDAGEQAGALESLLDRVATYKEKT
EKLKAKIKKAMTYPTAVLVVAVIVSGILLIKVVPQFQTVFSSFGADLPLFTLMVIALSEFVQQWWLAILGLLFGSFFLFK
RTYKQSQKFRDSLDRFLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGNVVFRNAVHKVKQDVSTGM
QLNFSMRSTGVFPSLAIQMTAIGEESGALDSMLDKVATYYEDEVDNMVDSLTSLMEPMIMAVLGVIVGGLVIAMYLPIFK
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1148761 C6H44_RS18465 WP_044320765.1 3890089..3891306(+) (pilC) [Pseudomonas syringae pv. cerasicola isolate CFBP6109]
ATGGCCAGCAAGGCAGTAAAAGTCAGCATTTATACTTGGGAAGGCCTGGACAAAAAGGGTGGAAAGCTCAGTGGAGAACT
GAGCGGCCACAACCCAGCGCTGATAAAAGCACAACTGCGCAAGCAGGGCGTCAACCCTACCAAAGTACGTAAGAAGTCAA
TTTCTATATTTGGAAAAGGTAAGAAAATCAAACCGCTGGACATAGCGTTCTTCTCCAGGCAGATGGCCACCATGATGAAA
GCCGGCGTACCTCTACTCCAATCGTTCGACATAATCAGCGAGGGTGCCGAGAACCCCAATATGCGAACGCTCGTGGTATC
GCTAAAGCAAGAAGTCTCAGCGGGGAACAGCTTCGCGACTGCCTTGCGACAAAAACCTGAACATTTTGATGAGCTGTTCT
GCAACCTCGTTGATGCAGGTGAACAGGCAGGCGCATTGGAAAGTCTTCTGGACAGGGTAGCAACGTACAAGGAAAAAACC
GAAAAACTCAAGGCCAAGATCAAAAAAGCCATGACCTACCCTACTGCTGTTCTCGTGGTGGCGGTAATAGTTTCAGGGAT
TCTGCTAATCAAAGTGGTACCGCAATTTCAGACAGTATTTTCAAGTTTCGGTGCAGATTTACCTCTGTTTACACTGATGG
TGATTGCCCTTTCAGAGTTTGTGCAGCAGTGGTGGCTAGCTATTCTGGGACTGCTATTTGGAAGCTTTTTTCTGTTCAAA
CGGACCTACAAACAATCTCAGAAATTTCGCGACAGCCTGGACAGGTTCTTGTTAAAAGTCCCAATCATAGGCCCGCTTAT
CTTCAAATCATCAGTAGCCCGCTATGCGCGCACTCTTGCCACCACTTTCGCTGCTGGCGTACCGCTGGTCGAGGCGCTGG
ACTCGGTGGCCGGGGCGACAGGGAATGTGGTGTTTCGAAATGCAGTCCATAAAGTAAAGCAGGATGTCTCCACCGGCATG
CAATTGAATTTCTCGATGAGATCCACAGGTGTATTTCCAAGTTTAGCGATCCAGATGACAGCTATCGGTGAGGAGTCTGG
CGCGCTCGACTCCATGCTCGATAAAGTTGCAACCTACTACGAAGATGAAGTCGATAACATGGTTGATAGCCTAACCAGTC
TGATGGAGCCGATGATCATGGCGGTGCTGGGAGTTATTGTCGGCGGCCTTGTGATTGCCATGTACCTCCCCATCTTCAAA
CTCGGAAGCGTTGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.074

100

0.741
  pilC Acinetobacter baumannii D1279779

59.901

99.753

0.598
  pilC Acinetobacter baylyi ADP1

59.069

100

0.595
  pilC Legionella pneumophila strain ERS1305867

52.778

97.778

0.516
  pilC Vibrio campbellii strain DS40M4

42.26

100

0.425
  pilG Neisseria gonorrhoeae MS11

41.935

99.506

0.417
  pilG Neisseria meningitidis 44/76-A

41.687

99.506

0.415
  pilC Vibrio cholerae strain A1552

40.741

100

0.407
  pilC Thermus thermophilus HB27

39.152

99.012

0.388

Multiple sequence alignment