Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CKV85_RS01850 Genome accession   NZ_LT906454
Coordinates   379887..380372 (+) Length   161 a.a.
NCBI ID   WP_095121702.1    Uniprot ID   -
Organism   Streptococcus acidominimus strain NCTC11291     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 377471..383163 379887..380372 within 0


Gene organization within MGE regions


Location: 377471..383163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV85_RS01840 (SAMEA4504048_00386) - 378221..379174 (-) 954 WP_095121550.1 IS30 family transposase -
  CKV85_RS01845 (SAMEA4504048_00387) rpsF 379585..379875 (+) 291 WP_017770045.1 30S ribosomal protein S6 -
  CKV85_RS01850 (SAMEA4504048_00388) ssb 379887..380372 (+) 486 WP_095121702.1 single-stranded DNA-binding protein Machinery gene
  CKV85_RS01855 (SAMEA4504048_00389) rpsR 380408..380647 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  CKV85_RS01860 - 380779..382109 (+) 1331 Protein_350 IS1182 family transposase -
  CKV85_RS01865 (SAMEA4504048_00392) - 382159..383163 (+) 1005 WP_095121704.1 IS5 family transposase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17970.69 Da        Isoelectric Point: 4.9008

>NTDB_id=1147476 CKV85_RS01850 WP_095121702.1 379887..380372(+) (ssb) [Streptococcus acidominimus strain NCTC11291]
MINNVVLVGRMTKDAELRYTPNQVAVATFTLAVNRNFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSQSSYNGGYNNQSSNNTFSSSSQTPNFARDESPFGNSNPMDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=1147476 CKV85_RS01850 WP_095121702.1 379887..380372(+) (ssb) [Streptococcus acidominimus strain NCTC11291]
ATGATAAATAATGTAGTACTTGTTGGTCGCATGACCAAAGATGCAGAACTTCGTTACACACCTAATCAAGTTGCTGTAGC
AACATTTACTCTAGCAGTTAATCGTAATTTCAAGAGTCAAAATGGTGAACGTGAAGCTGATTTTATTAATTGTGTGATCT
GGCGTCAACCGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGTGCCTTAATTGGTGTCACTGGACGCATCCAGACACGT
AATTATGAAAATCAACAAGGCCAACGTGTTTATGTAACAGAGGTTGTTGCAGACAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGTTCACAAAGTTCATATAATGGTGGTTATAATAACCAATCATCAAACAACACTTTTTCATCTTCAT
CACAAACACCAAACTTTGCTCGCGATGAGAGCCCATTTGGCAATTCGAACCCAATGGATATCTCAGATGACGATCTACCG
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.412

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.191

100

0.627
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.839

0.379
  ssbB/cilA Streptococcus pneumoniae TIGR4

55.046

67.702

0.373
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.373
  ssbB/cilA Streptococcus pneumoniae Rx1

54.128

67.702

0.366
  ssbB/cilA Streptococcus pneumoniae D39

54.128

67.702

0.366
  ssbB/cilA Streptococcus pneumoniae R6

54.128

67.702

0.366
  ssbB/cilA Streptococcus mitis SK321

54.128

67.702

0.366
  ssbB/cilA Streptococcus mitis NCTC 12261

54.128

67.702

0.366

Multiple sequence alignment