Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   CKV83_RS07290 Genome accession   NZ_LT906439
Coordinates   1586797..1587192 (-) Length   131 a.a.
NCBI ID   WP_018374301.1    Uniprot ID   -
Organism   Streptococcus merionis strain NCTC13788     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1580880..1587192 1586797..1587192 within 0


Gene organization within MGE regions


Location: 1580880..1587192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS11600 (SAMEA4412692_01453) - 1580880..1581248 (+) 369 WP_018374293.1 helix-turn-helix transcriptional regulator -
  CKV83_RS07265 (SAMEA4412692_01454) - 1581540..1582676 (+) 1137 WP_018374295.1 Fic family protein -
  CKV83_RS11285 - 1582873..1583064 (+) 192 WP_145955191.1 hypothetical protein -
  CKV83_RS11605 - 1583589..1584140 (-) 552 Protein_1424 transposase -
  CKV83_RS07275 (SAMEA4412692_01456) - 1584142..1584372 (+) 231 WP_145955193.1 hypothetical protein -
  CKV83_RS07280 (SAMEA4412692_01457) groL 1584736..1586358 (-) 1623 WP_018374299.1 chaperonin GroEL -
  CKV83_RS07285 (SAMEA4412692_01458) - 1586377..1586658 (-) 282 WP_018374300.1 co-chaperone GroES -
  CKV83_RS07290 (SAMEA4412692_01459) ssbB/cilA 1586797..1587192 (-) 396 WP_018374301.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14856.81 Da        Isoelectric Point: 5.7816

>NTDB_id=1147139 CKV83_RS07290 WP_018374301.1 1586797..1587192(-) (ssbB/cilA) [Streptococcus merionis strain NCTC13788]
MLNKMIMIGRLVQQPELQTTANDKHVTRFTIAVNRKYRGQDGERQTDFIQTVAWGKLAESLASYGTKGSLVAIDGELRTR
KYEKDGETHYVSEVLCNGFQLLESRAQRAVRENNVGQDLADLVLEEEPLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1147139 CKV83_RS07290 WP_018374301.1 1586797..1587192(-) (ssbB/cilA) [Streptococcus merionis strain NCTC13788]
ATGTTAAATAAAATGATTATGATTGGGCGTTTGGTTCAGCAACCTGAGCTGCAAACGACAGCCAACGACAAGCACGTCAC
TCGTTTTACCATTGCTGTTAACCGCAAGTATCGTGGTCAGGACGGTGAGCGCCAGACAGACTTTATCCAGACGGTGGCTT
GGGGGAAATTGGCCGAGAGTTTAGCGAGTTATGGGACCAAGGGAAGTCTGGTTGCCATTGATGGGGAATTGCGGACGCGT
AAATATGAAAAAGACGGTGAGACGCACTATGTTTCAGAGGTGCTCTGCAACGGTTTCCAGCTTTTAGAAAGTCGCGCTCA
GCGTGCTGTGCGAGAAAATAATGTTGGCCAAGATTTAGCAGATTTGGTCTTGGAAGAAGAACCGCTCCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbA Streptococcus mutans UA159

68.702

100

0.687
  ssbB Streptococcus sobrinus strain NIDR 6715-7

66.412

100

0.664
  ssbB Lactococcus lactis subsp. cremoris KW2

48.696

87.786

0.427
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.283

80.916

0.366

Multiple sequence alignment