Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LZ3411_RS08255 Genome accession   NZ_LT854705
Coordinates   1726604..1727854 (-) Length   416 a.a.
NCBI ID   WP_087742219.1    Uniprot ID   -
Organism   Levilactobacillus zymae strain ACA-DC 3411     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1721604..1732854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ3411_RS08240 (LZ3411_1583) - 1722574..1723371 (-) 798 WP_057733304.1 TIGR00282 family metallophosphoesterase -
  LZ3411_RS08245 (LZ3411_1584) rny 1723500..1725059 (-) 1560 WP_057733302.1 ribonuclease Y -
  LZ3411_RS08250 (LZ3411_1585) recA 1725339..1726511 (-) 1173 WP_087742218.1 recombinase RecA Machinery gene
  LZ3411_RS08255 (LZ3411_1586) cinA 1726604..1727854 (-) 1251 WP_087742219.1 competence/damage-inducible protein A Machinery gene
  LZ3411_RS08260 (LZ3411_1587) pgsA 1727974..1728561 (-) 588 WP_087742220.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LZ3411_RS08265 (LZ3411_1588) - 1728634..1729578 (-) 945 WP_087742221.1 helix-turn-helix domain-containing protein -
  LZ3411_RS08270 (LZ3411_1589) yfmH 1729671..1730978 (-) 1308 WP_087742222.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LZ3411_RS08275 (LZ3411_1590) yfmF 1730978..1732249 (-) 1272 WP_087742223.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44661.69 Da        Isoelectric Point: 5.3769

>NTDB_id=1146489 LZ3411_RS08255 WP_087742219.1 1726604..1727854(-) (cinA) [Levilactobacillus zymae strain ACA-DC 3411]
MQAEIIAVGTEILLGQVVDTNSAFIAQELASAGIEVYYHSLVGDNADRLTAVLEQARSRSDLVVISGGLGPTKDDLTKQT
VAQLLGVKLVEDAAAMTKIQAHFATTGRPLTPNNRLQALYLAGSQPLKNLTGMAVGAFYQDPHGADMMLLPGPPSELEPM
FIHEALPALKHAYERHEYLTSRVLRFFGIGESQLVTQLSDLIDGQTNPTIAPYAKRNEVTLRLTAQTTETASAEALLDQM
TATIQERVGDYLYGYGDDNSLANVVVHQLIAQHLTITGAESLTAGEFQSTIGSVPGVSAVFPGGFVTYANRAKHQLLGIP
QHIIDTQGVVSEATAKEMAERARQLLDTDLALSFTGAAGPDSLEGHPAGTVWLGLAQRGQAPQAKLMHFAGTRSDVRMRS
VLSGLDWLRRTLPTEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1146489 LZ3411_RS08255 WP_087742219.1 1726604..1727854(-) (cinA) [Levilactobacillus zymae strain ACA-DC 3411]
ATGCAAGCGGAAATTATTGCAGTGGGAACGGAAATTTTACTAGGACAAGTCGTCGATACAAATTCGGCCTTTATCGCCCA
GGAGCTCGCGAGTGCGGGAATTGAGGTGTACTACCATTCGCTAGTGGGTGACAATGCCGACCGACTAACGGCCGTGTTGG
AGCAGGCGCGCTCGCGCAGTGATCTGGTGGTGATCAGCGGTGGGCTGGGACCGACCAAGGACGATTTGACCAAGCAGACG
GTCGCCCAACTCCTAGGCGTCAAGCTGGTCGAAGACGCGGCGGCTATGACCAAGATTCAGGCCCACTTTGCCACGACGGG
CCGGCCGTTGACGCCCAATAACCGGCTCCAGGCGTTGTATTTAGCCGGGAGCCAACCCTTAAAGAACTTGACGGGGATGG
CGGTAGGGGCCTTCTATCAGGACCCCCACGGCGCGGATATGATGTTATTACCCGGGCCACCGAGTGAACTGGAACCGATG
TTTATTCACGAAGCACTGCCGGCCCTAAAGCACGCCTACGAACGGCACGAATACCTCACGTCACGCGTGTTGCGATTCTT
TGGCATCGGGGAGAGTCAACTGGTGACTCAGCTAAGCGACCTGATCGATGGGCAGACCAACCCGACGATTGCCCCGTACG
CTAAACGCAATGAAGTGACCCTGCGGTTAACGGCCCAGACTACGGAAACGGCGTCGGCGGAAGCGTTATTGGATCAAATG
ACGGCTACCATCCAGGAACGTGTCGGCGACTACCTCTACGGGTACGGTGACGATAATAGCCTAGCCAACGTGGTGGTCCA
CCAGTTGATCGCGCAGCACCTGACGATTACGGGGGCTGAGAGTTTAACGGCCGGTGAGTTTCAGAGTACGATTGGGAGCG
TGCCGGGGGTCTCGGCCGTCTTTCCGGGGGGGTTCGTGACGTACGCCAATCGCGCCAAACACCAATTACTCGGGATTCCG
CAACACATCATCGATACCCAGGGGGTGGTCAGTGAGGCCACGGCCAAGGAAATGGCCGAACGTGCCCGGCAATTGCTGGA
TACCGATCTGGCGTTGAGCTTTACGGGAGCGGCCGGGCCGGATAGCCTGGAAGGCCACCCCGCCGGGACCGTGTGGCTAG
GCTTAGCCCAACGGGGACAAGCGCCCCAGGCGAAGCTGATGCACTTTGCGGGCACCCGCAGCGACGTGCGCATGCGGTCC
GTTTTGAGTGGTTTGGATTGGCTACGGCGAACGCTTCCGACCGAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-171)

Competence-damaged protein (CinA)

(259-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

51.306

100

0.519
  cinA Streptococcus mitis SK321

50.711

100

0.514
  cinA Streptococcus mitis NCTC 12261

50.711

100

0.514
  cinA Streptococcus pneumoniae TIGR4

49.526

100

0.502
  cinA Streptococcus pneumoniae Rx1

49.289

100

0.5
  cinA Streptococcus pneumoniae R6

49.289

100

0.5
  cinA Streptococcus pneumoniae D39

49.052

100

0.498
  cinA Bacillus subtilis subsp. subtilis str. 168

46.715

98.798

0.462
  cinA Streptococcus suis isolate S10

42.169

99.76

0.421

Multiple sequence alignment