Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DABAL43B_RS00380 Genome accession   NZ_LT799838
Coordinates   88650..89873 (-) Length   407 a.a.
NCBI ID   WP_079690562.1    Uniprot ID   A0A1U6GIL3
Organism   Psychrobacter sp. DAB_AL43B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 83650..94873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DABAL43B_RS00360 (DABAL43B_0072) - 85592..85927 (+) 336 WP_079690558.1 pyrimidine/purine nucleoside phosphorylase -
  DABAL43B_RS00365 (DABAL43B_0073) rlmB 86146..86916 (+) 771 WP_079690559.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DABAL43B_RS00370 (DABAL43B_0074) coaE 86879..87571 (-) 693 WP_079690560.1 dephospho-CoA kinase -
  DABAL43B_RS00375 (DABAL43B_0075) pilD 87725..88624 (-) 900 WP_079690561.1 prepilin peptidase Machinery gene
  DABAL43B_RS00380 (DABAL43B_0076) pilC 88650..89873 (-) 1224 WP_079690562.1 type II secretion system F family protein Machinery gene
  DABAL43B_RS00385 (DABAL43B_0077) pilB 90104..91813 (-) 1710 WP_079690563.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DABAL43B_RS00390 (DABAL43B_0078) tpiA 92263..93072 (+) 810 WP_079690564.1 triose-phosphate isomerase -
  DABAL43B_RS00395 (DABAL43B_0079) secG 93289..93597 (+) 309 WP_079692976.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44593.58 Da        Isoelectric Point: 9.7800

>NTDB_id=1146230 DABAL43B_RS00380 WP_079690562.1 88650..89873(-) (pilC) [Psychrobacter sp. DAB_AL43B]
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKSIKPIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRRHPRYFDDLFCSLVESGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVVVVALIVTIILLVKVVPVFSGLFESFGAELPAFTQMVVGMSEWMQAWWFLLLIIIGGTIISF
SEAKKRSKKFRDVLDRAVLKAPIFGNIAYQAVIARFSRTLSTTFAAGVPLLDALDSTAGAANNVVFYNAIQQIKNDVSTG
QQLQFSMRSTNLFPSLAIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPMIMAVLGVLIGGLVIAMYLPIF
QMGAVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1146230 DABAL43B_RS00380 WP_079690562.1 88650..89873(-) (pilC) [Psychrobacter sp. DAB_AL43B]
ATGGCAAAAGCTAAGACCGACATGCTATTAGACTTTGTCTATGATGGGGTAAACCGGCGTGGGCAAAAGGTAAAAGGCGA
GACGACCAGTCGTAGCTTAGAGCTAGCAAAAGCCACTTTGCGCAAACAAGGTATCACCGTTAAAGGGATTAAGAAAAAAC
CGAAACCCTTATACACCTTCAAAAAATCCATTAAGCCTATCGATATTGCTATTTTTGCCCGTCAATTGGCAACGATGATG
AAAGCTGGGGTGCCGTTAACACAATCCTTTGAGATTGTTGCTGACTCCCTTGATAACCCTAGTATGAAAGATTTGGTGCT
ACAAATAAAAGCAGATATTGAAGCCGGTGGTACTTTTGCTTCGGCATTACGTAGACACCCACGCTATTTCGATGATCTAT
TTTGTTCCCTTGTTGAATCCGGTGAGCAGTCAGGTGCATTAGAAACCATGTTAGAGCGAGTAGCGACTTATAAAGAAAAA
AGTGAACTGCTTAAAGCAAAAATAAAGAAAGCTATGAAATATCCTATCGCCGTCGTGGTGGTCGCTCTTATTGTTACTAT
TATTCTACTGGTTAAAGTGGTTCCAGTGTTTTCTGGATTATTCGAGTCTTTTGGTGCAGAATTGCCTGCTTTTACCCAAA
TGGTGGTGGGTATGTCTGAGTGGATGCAAGCATGGTGGTTCCTTTTGCTTATTATTATTGGTGGTACCATCATTAGTTTT
TCAGAAGCTAAAAAGCGCTCGAAGAAATTTCGTGATGTTTTAGACCGTGCGGTATTGAAGGCACCAATATTTGGTAATAT
TGCTTATCAAGCGGTTATTGCACGTTTCTCTCGTACGCTATCGACTACTTTTGCTGCTGGTGTACCACTACTTGATGCTC
TAGACTCTACCGCTGGTGCGGCCAACAACGTAGTTTTTTATAACGCTATTCAGCAAATTAAAAATGATGTCTCTACGGGT
CAACAATTACAGTTTTCAATGCGCTCAACCAATTTGTTTCCAAGTTTAGCTATTCAAATGGTCGGTATCGGTGAAGAGTC
TGGTAGCTTAGAAGAGATGCTAGATAAAGTAGCAGTCTATTACGAAAACGAAGTTGATAACGCCGTTGATGGTCTGACCA
GCTTAATGGAGCCAATGATTATGGCAGTGTTAGGGGTATTAATCGGTGGCTTAGTCATTGCTATGTATTTGCCAATTTTC
CAAATGGGTGCAGTGGTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U6GIL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

69.118

100

0.693
  pilC Acinetobacter baylyi ADP1

67.402

100

0.676
  pilC Pseudomonas stutzeri DSM 10701

63.797

97.052

0.619
  pilC Legionella pneumophila strain ERS1305867

55.639

98.034

0.545
  pilC Vibrio cholerae strain A1552

43.873

100

0.44
  pilG Neisseria gonorrhoeae MS11

43.434

97.297

0.423
  pilG Neisseria meningitidis 44/76-A

43.434

97.297

0.423
  pilC Vibrio campbellii strain DS40M4

41.75

98.28

0.41

Multiple sequence alignment