Detailed information NTG1145112

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: STACADC2_RS08460
• Genome accession: NZ_LT604076
• Coordinates: 1593933..1594361 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain ACA-DC
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1588933..1599361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STACADC2_RS08420 (STACADC2_1629)	-	1589066..1589509 (-)	444	WP_087010195.1	CAAX protease	-
STACADC2_RS10180 (STACADC2_1630)	-	1589583..1590008 (-)	426	WP_087010196.1	CPBP family intramembrane glutamic endopeptidase	-
STACADC2_RS08430 (STACADC2_1631)	-	1590256..1590453 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
STACADC2_RS08435 (STACADC2_1632)	-	1590702..1591895 (-)	1194	WP_087010197.1	acetate kinase	-
STACADC2_RS08440 (STACADC2_1633)	comYH	1591951..1592907 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
STACADC2_RS08445 (STACADC2_1634)	comGG	1592952..1593269 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
STACADC2_RS08450 (STACADC2_1635)	comYF	1593247..1593684 (-)	438	WP_022096897.1	competence type IV pilus minor pilin ComGF	Machinery gene
STACADC2_RS08455 (STACADC2_1636)	comGE	1593668..1593961 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
STACADC2_RS08460 (STACADC2_1637)	comYD	1593933..1594361 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
STACADC2_RS08465 (STACADC2_1638)	comYC	1594321..1594647 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STACADC2_RS08470 (STACADC2_1639)	comYB	1594644..1595744 (-)	1101	WP_157659050.1	competence type IV pilus assembly protein ComGB	Machinery gene
STACADC2_RS08475 (STACADC2_1640)	comGA/cglA/cilD	1595626..1596567 (-)	942	WP_022096896.1	competence type IV pilus ATPase ComGA	Machinery gene
STACADC2_RS08480 (STACADC2_1641)	-	1596648..1597010 (-)	363	WP_087010198.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=1145112 STACADC2_RS08460 WP_011226626.1 1593933..1594361(-) (comYD) [Streptococcus thermophilus strain ACA-DC]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=1145112 STACADC2_RS08460 WP_011226626.1 1593933..1594361(-) (comYD) [Streptococcus thermophilus strain ACA-DC]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38